RESUMO
One of the most noticeable environmental discontinuities in mountains is the transition that exists in vegetation below and above the treeline. In the North Patagonian Andean lakes (between 900 and 1950 m a.s.l.), we analyzed the bacterial community composition of lakes in relation to surrounding vegetation (erected trees, krummholz belt, and bare rocks), dissolved organic carbon (DOC), and total dissolved nutrients (nitrogen, TDN and phosphorus, TDP). We observed a decrease in DOC, TDP, and TDN concentrations with altitude, reflecting shifts in the source inputs entering the lakes by runoff. Cluster analysis based on bacterial community composition showed a segregation of the lakes below treeline, from those located above. This first cluster was characterized by the cyanobacteria Cyanobium PCC-6307, while in the krummholz belt and bare rocks, bacterial communities were dominated by Actinobacteria hgcl-clade and Proteobacteria (Sandarakinorhabdus and Rhodovarius), with the presence of pigments such as actinorhodopsin, carotenoids, and bacteriochlorophyll a. The net relatedness index (NRI), which considers the community phylogenetic dispersion, showed that lakes located on bare rocks were structured by environmental filtering, while communities of lakes below treeline were structured by species interactions such as competition. Beta-diversity was higher among lakes below than among lakes located above the treeline. The contribution of species turnover was more important than nestedness. Our study brings light on how bacterial communities may respond to changes in the surrounding vegetation, highlighting the importance of evaluating different aspects of community structure to understand metacommunity organization.
Assuntos
Bactérias , Lagos , Filogenia , Lagos/microbiologia , Lagos/química , Bactérias/classificação , Bactérias/genética , Bactérias/isolamento & purificação , Cianobactérias/genética , Cianobactérias/classificação , Microbiota , Nitrogênio/análise , Carbono/análise , Carbono/metabolismo , Fósforo/análise , Biodiversidade , Altitude , Árvores/microbiologia , ArgentinaRESUMO
Soil microbial traits and functions play a central role in soil organic carbon (SOC) dynamics. However, at the macroscale (regional to global) it is still unresolved whether (i) specific environmental attributes (e.g., climate, geology, soil types) or (ii) microbial community composition drive key microbial traits and functions directly. To address this knowledge gap, we used 33 grassland topsoils (0-10 cm) from a geoclimatic gradient in Chile. First, we incubated the soils for 1 week in favorable standardized conditions and quantified a wide range of soil microbial traits and functions such as microbial biomass carbon (MBC), enzyme kinetics, microbial respiration, growth rates as well as carbon use efficiency (CUE). Second, we characterized climatic and physicochemical properties as well as bacterial and fungal community composition of the soils. We then applied regression analysis to investigate how strongly the measured microbial traits and functions were linked with the environmental setting versus microbial community composition. We show that environmental attributes (predominantly the amount of soil organic matter) determined patterns of MBC along the gradient, which in turn explained microbial respiration and growth rates. However, respiration and growth normalized for MBC (i.e., specific respiration and growth) were more linked to microbial community composition than environmental attributes. Notably, both specific respiration and growth followed distinct trends and were related to different parts of the microbial community, which in turn resulted in strong effects on microbial CUE. We conclude that even at the macroscale, CUE is the result of physiologically decoupled aspects of microbial metabolism, which in turn is partially determined by microbial community composition. The environmental setting and microbial community composition affect different microbial traits and functions, and therefore both factors need to be considered in the context of macroscale SOC dynamics.
Assuntos
Ciclo do Carbono , Carbono , Microbiota , Microbiologia do Solo , Solo , Chile , Carbono/metabolismo , Carbono/análise , Solo/química , Fungos/fisiologia , Bactérias/metabolismo , Bactérias/classificação , Bactérias/crescimento & desenvolvimento , Biomassa , PradariaRESUMO
Assessing the bacterial community composition across cacao crops is important to understand its potential role as a modulator of cadmium (Cd) translocation to plant tissues under field conditions; Cd mobility between soil and plants is a complex and multifactorial problem that cannot be captured only by experimentation. Although microbes have been shown to metabolize and drive the speciation of Cd under controlled conditions, regardless of the link between soil bacterial community (SBC) dynamics and Cd mobilization in the rhizosphere, only a few studies have addressed the relationship between soil bacterial community composition (SBCC) and Cd content in cacao seeds (Cdseed). Therefore, this study aimed to explore the association between SBCC and different factors influencing the distribution of Cd across cacao crop systems. This study comprised 225 samples collected across five farms, where we used an amplicon sequencing approach to characterize the bacterial community composition. The soil Cd concentration alone (Cdsoil) was a poor predictor of Cdseed. Still, we found that this relationship was more apparent when the variation within farms was controlled, suggesting a role of heterogeneity within farms in modulating Cd translocation and, thus, seed Cd content. Our results provide evidence of the link between soil bacterial communities and the distribution of Cd across Colombian cacao crops, and highlight the importance of incorporating fine-spatial-scale studies to advance the understanding of factors driving Cd uptake and accumulation in cacao plants. IMPORTANCE: Cadmium (Cd) content in cacao crops is an issue that generates interest due to the commercialization of chocolate for human consumption. Several studies provided evidence about the non-biological factors involved in its translocation into the cacao plant. However, factors related to this process, including soil bacterial community composition (SBCC), still need to be addressed. It is well known that soil microbiome could impact compounds' chemical transformation, including Cd, on the field. Here, we found the first evidence of the link between soil bacterial community composition and Cd concentration in cacao soils and seeds. It highlights the importance of including the variation of bacterial communities to assess the factors driving the Cd translocation into cacao seeds. Moreover, the results highlight the relevance of the spatial heterogeneity within and across cacao farms, influencing the variability of Cd concentrations.
Assuntos
Bactérias , Cacau , Cádmio , Produtos Agrícolas , Microbiota , Rizosfera , Sementes , Microbiologia do Solo , Poluentes do Solo , Cádmio/metabolismo , Cádmio/análise , Cacau/microbiologia , Cacau/metabolismo , Bactérias/classificação , Bactérias/genética , Bactérias/metabolismo , Bactérias/isolamento & purificação , Poluentes do Solo/metabolismo , Poluentes do Solo/análise , Colômbia , Produtos Agrícolas/microbiologia , Produtos Agrícolas/metabolismo , Sementes/microbiologia , Sementes/metabolismo , Solo/químicaRESUMO
The Mexican Caribbean coral reef ecosystem has endured the effects of global and regional stressors and, recently, the massive arrivals of the free-living, floating brown algae Sargassum spp. This study aimed to evaluate spatiotemporal changes in the stony coral community structure in the southern Mexican Caribbean by a temporal comparison of live coral cover and colony density using a data set collected in 2008-2009 and a recent survey in 2021 within a Protected Natural Area. A multivariate analysis approach was used to reveal spatiotemporal changes in coral cover and colony densities. Coral cover ranged from 6.9 to 8.9% in 2008-2009 to 6.5% in 2021, the lowest values recorded for the area. Coral colony density ranged from 0.68 to 0.78 colonies m-1 in 2008-2009 to 0.68 colonies m-1 in 2021. The present results appear to represent subtle changes during the last decade.
Assuntos
Antozoários , Ecossistema , Animais , Recifes de Corais , Região do Caribe , MéxicoRESUMO
Deforestation, agriculture, farmyard animal husbandry, and urbanization are known to be the main causes of biodiversity loss and habitat fragmentation. The present study evaluated the role of anthropization in modulating Muscidae (Diptera) assemblages in the Humid Chaco ecoregion of Argentina, by testing the biotic homogenization and intermediate disturbance hypotheses. The study focused on natural, rural, and urban habitats in San Lorenzo Department, Chaco Province, where sarcosaprophagous muscid flies were surveyed. A total of 1,343 muscid flies were captured and identified to 7 genera and 24 species and morphospecies. We observed the effect of anthropization on the structuring of the assemblages and the presence of exotic species associated with human activity resulting from biotic homogenization. The highest abundance was recorded in the urban habitat, while the highest species richness and diversity (Shannon-Wienner and Hill's numbers) were found in the rural habitat, supporting the intermediate disturbance hypothesis. Several species are classified as indicators of habitat as well as according to their index of synanthropy. Our results provide valuable information about the use of sarcosaprophagous muscids as indicators of disturbance of natural habitats and about possible health risks related to this family of Calyptratae flies previously unsurveyed in northeastern Argentina. This information could be used in the ecological, agronomy, sanitary, and forensic fields.
Assuntos
Dípteros , Muscidae , Humanos , Animais , Argentina , Biodiversidade , Ecossistema , UrbanizaçãoRESUMO
The Fundão dam failure, the worst environmental disaster in Brazilian history, launched 50 million m3 of iron ore tailings mud through the Doce River, reaching the Atlantic Ocean. Generally, mine tailings increase the sediment inflow, leading to mud burial of epibenthic macrofauna, and the raise of metal(oid)s concentration causing macrofauna long-term changes. After almost four years, tailings mud was still spreading on the Doce River Shelf, while impacts on marine macrofauna were still unknown. Herein, the IMS index (a tracer of Fundão dam tailings mud), sediment variables, organic pollutants, and metal(oid)s were integrated to uncover the drives of macrofauna structure from Costas da Algas to Abrolhos bank MPAs. Tailings mud was present only in Doce River Mouth and Degredo, organic pollutants and metal(oid)s above safety levels were concentrated in those same areas. Tailings mud (IMS index) drastically reduced species richness and diversity, favoring the abundance of opportunistic species. Mud, IMS index and Al, Ba, and V, metal(oid)s linked to dam failure, structured macrofauna composition in this impacted area, dominated by resistant groups as Nuculidae, Spionidae, and Magelonidae. Conversely, an opposite pattern was found for further and deeper sites with high CaCO3 content and total nitrogen that also showed large grain size, in areas known to harbour biogenic structures, sustaining a macrofauna composition distinct from the impacted areas, dominated by Syllidae and Crassatellidae, sensitives to impacts. Macrofauna composition was most structured by sediment variables, followed by the intersection between metal(oid)s-IMS and Mud, both gradients acting almost entirely on a broad spatial scale. Benthic macrofauna at the Doce River Shelf is still impacted by Fundão dam tailings mud, even after almost four years of the disaster, and may continue to, since the influx of tailings does not stop, and sediment resuspension is a recurrent source for those impacts.
Assuntos
Poluentes Ambientais , Compostos de Ferro , Poliquetos , Poluentes Químicos da Água , Animais , Brasil , Monitoramento Ambiental , Ferro , Metais , Rios/química , Poluentes Químicos da Água/análiseRESUMO
A comparative study on forests and grasslands in three ecoregions (Humid Chaco, Espinal, and Paranaense) was conducted in two protected areas in northeastern Argentina: Iberá National Park and Mburucuyá National Park. The effects of habitat heterogeneity (vegetation cover) on terrestrial ant (Formicidae) assemblages were analyzed and compared. The habitat heterogeneity hypothesis-which predicts that when environmental structural complexity increases, the species richness will also increase-was tested. Two sites were selected in each ecoregion. A forest and a grassland were surveyed in each site, using unbaited pitfall traps from October 2013 to February 2014. Overall, 5,465 ants belonging to 37 species were collected, 32 of which were present in forests and 26 in grasslands. Solenopsis invicta Buren (Hymenoptera: Formicidae) and Pheidole radoszkowskii Mayr (Hymenoptera: Formicidae) were the most abundant species. Formicidae assemblages were compared in terms of abundance, species richness, and diversity between habitats and ecoregions. The results of this study support the habitat heterogeneity hypothesis, since we found a higher diversity of ants in more structured habitats (i.e., forest) in the three ecoregions analyzed. Also, the ant assemblages differed both between habitats and between ecoregions. Our findings provide the first assessment of terrestrial ant assemblages in natural habitats of the three ecoregions in Corrientes Province, Argentina.
Assuntos
Formigas , Animais , Argentina , Ecossistema , Florestas , PradariaRESUMO
The gut microbiota is a complex community composed by several microorganisms that interact in the maintenance of homeostasis and contribute to physiological processes, including brain function. The relationship of the taxonomic composition of the gut microbiota with neurological diseases such as autism, Parkinson's, Alzheimer's, anxiety, and depression is widely recognized. The immune system is an important intermediary between the gut microbiota and the central nervous system, being one of the communication routes of the gut-brain axis. Although the complexity of the relationship between inflammation and epilepsy has not yet been elucidated, inflammatory processes are similar in many ways to the consequences of dysbiosis and contribute to disease progression. This study aimed to analyze the taxonomic composition of the gut microbiota of rats treated with prednisolone in a kindling model of epilepsy. Male Wistar rats (90 days, n = 24) divided into four experimental groups: sodium chloride solution 0.9 g%, diazepam 2 mg/kg, prednisolone 1 mg/kg, and prednisolone 5 mg/kg administered intraperitoneally (i.p.) for 14 days. The kindling model was induced by pentylenetetrazole (PTZ) 25 mg/kg i.p. on alternate days. The taxonomic profile was established by applying metagenomic DNA sequencing. There was no change in alpha diversity, and the composition of the gut microbiota between prednisolone and diazepam was similar. The significant increase in Verrucomicrobia, Saccharibacteria, and Actinobacteria may be related to the protective activity against seizures and inflammatory processes that cause some cases of epilepsy. Further studies are needed to investigate the functional influence that these species have on epilepsy and the inflammatory processes that trigger it.
Assuntos
Microbioma Gastrointestinal , Pentilenotetrazol , Animais , Masculino , Prednisolona , Ratos , Ratos Wistar , Convulsões/induzido quimicamenteRESUMO
Species diversity can be affected by the structure of vegetation, which may vary in height, density, and distribution of trees, shrubs, and other plant types, configuring different types of habitats. In this study, we evaluated the diversity of sarcosaprophagous Sarcophagidae communities inhabiting the remnant representative habitats protected in Ciervo de los Pantanos National Park: grasslands, forests, and wetlands. We hypothesized that the abundance and diversity of flesh flies would be higher in the grasslands and wetlands than in the forest patches. Samplings were carried out in each habitat type using baited traps during the four seasons in 2015, 2016, and 2019. We collected 585 sarcophagid flies of 17 species. Fifteen species were recorded in grasslands, twelve in the wetlands, and seven in the forests, Tricharaea (Sarcophagula) occidua (Fabricius) (Diptera: Sarcophagidae) being the most abundant (58.3% of the total sample). As expected, the highest abundance was recorded in grasslands whereas the lowest was found in forests. In addition, flesh fly abundance was affected by season. Sarcophagid assemblages differed between habitats and the overall dissimilarity was mainly explained by nestedness. This study provides important information about sarcosaprophagous sarcophagid flies in a little-studied protected natural area in Argentina, which is fundamental for their conservation and useful in forensic investigations.
Assuntos
Dípteros , Sarcofagídeos , Animais , Ecossistema , Florestas , Parques RecreativosRESUMO
Abstract Introduction: Lichen diversity, community structure, composition and species abundance have been used as indicators of the integrity and ecological continuity of tropical forest ecosystems. Objectives: To assess corticolous lichen species composition, diversity, and ecological importance of three forested stands differing in time of abandonment as indicators of how passive restoration influences the lichen community assemblage. Methods: We surveyed individual lichens on tree stems of a reference old secondary forest and a young secondary forest (50 and 14-year-old natural regeneration after pasture abandonment, respectively), and in a 35-year-old exotic cypress tree plantation, in the oriental Central Valley, in Orosí, Costa Rica. Standard diversity, similarity indexes, and the importance value index were calculated. An NMDS analysis was performed on the community structure parameters and in a presence-absence matrix. Results: We found 64 lichen species in 25 families with 42, 21, and 23 species, and 20, 10, and 15 families, in the young and old secondary forests, and the cypress plantation, respectively. Cryptothecia sp. possessed the highest importance across sites. More than 87 % of the species are rare. The combined IVI of the top three families were: 36, 48.5, and 74.8 % in the young and old forests and the Cypress plantation sites, respectively. Overall, Arthoniaceae is in the top three families. The young forest had the highest species richness, but the old forest presented the best evenness. Similarity and diversity indexes suggest a particularly low resemblance in the lichen communities but a smooth gradient differentiation between the three forests, which was confirmed by the NMDS test. The homogeneity test identified great differences in ecological importance and composition. Conclusions: This region contains a distinctive assemblage of species resulting in a strong community differentiation by site, reflecting the influence of ecophysiological and microclimatic factors that define lichen establishment and survival and suggesting a great regional beta diversity, within a fragmented landscape. Greater connectivity and passive restoration strategies resulted in greater diversity and a more heterogeneous community structure on both forests than the corticolous community of the abandoned plantation. Protection of forest fragments will maximize the integrity of future forests.
Resumen Introducción: La diversidad de líquenes, la estructura y composición de la comunidad y la abundancia de algunas especies y familias se ha usado como indicadores de la salud y continuidad ecológica de los ecosistemas boscosos tropicales. Objetivos: Evaluar la composición, diversidad e importancia ecológica de las especies de líquenes en tres ecosistemas boscosos que difieren en el tiempo regeneración natural, como indicadores de la influencia de la restauración pasiva en el ensamble de la comunidad de líquenes cortícolas. Métodos: Se midieron los líquenes individuales sobre los troncos de árboles en un bosque secundario avanzado (OF), en un bosque secundario joven (YF, con 50 y 14 años de regeneración natural tras abandono del potrero, respectivamente), y en una plantación abandonada de ciprés exótico con 35 años de edad (CP), en la región oriental del Valle Central de Costa Rica. Se calcularon los índices estándares de diversidad, similitud y valor de importancia (IVI), además de un análisis de NMDS sobre los parámetros de la estructura de la comunidad en una matriz de presencia-ausencia. Resultados: Encontramos 64 especies en 25 familias, con 42, 23 y 21 especies y 20, 10 y 15 familias en los sitios YF, CP y OF, respectivamente. Una especie de Cryptothecia sp. presentó el IVI más alto en los tres bosques. Más del 87 % de las especies son raras. El IVI combinado de las tres familias más importantes fue: 36, 48.5 y 74.8 % en los sitios: YF, OF y CP, respectivamente. Arthoniaceae está entre las tres familias más importantes en los tres sitios. El YF es el sitio con más especies, pero el sitio OF presentó la mayor igualdad. Los índices de similitud y diversidad sugieren una semejanza particularmente baja entre las comunidades liquénicas, pero separadas por una gradiente de diferenciación difusa entre los tres sitios, lo cual es confirmado por el análisis NMDS. La prueba de homogeneidad confirmó grandes diferencias en la importancia ecológica y la composición. Conclusiones: La región contiene un ensamblaje propio de especies que resulta en una fuerte diferenciación comunitaria entre bosques, reflejo de la influencia de factores ecofisiológicos y microclimáticos en el establecimiento y supervivencia de líquenes; lo que sugiere una gran diversidad beta regional, en un paisaje fragmentado. Una mayor conectividad y estrategias de restauración pasiva dieron como resultado una mayor diversidad y una estructura comunitaria más heterogénea en ambos bosques que la comunidad cortícola de la plantación exótica abandonada. La protección de fragmentos forestales maximizará la integridad de los bosques futuros.
Assuntos
Ecossistema Tropical , Líquens , Costa RicaRESUMO
When describing plant-animal interaction networks, sampling can be performed using plant- or animal-centred approaches. Despite known effects of sampling on network structure, how samplings affect the estimates of interaction ß-diversity across networks is still unresolved. We investigated how the sampling method affects the assessment of ß-diversity of interactions, turnover and rewiring. We contrasted plant- and animal-centred sampling methods applied to pollination networks across habitats in a heterogeneous tropical landscape, the Pantanal Wetlands. We also asked whether plant traits influence the difference in interaction specialization according to sampling. Plant-centred networks resulted in higher ß-diversity of interactions in space than animal-centred networks. Turnover explained most of the ß-diversity in both methods, but rewiring was proportionately more important when using the animal-centred method. While the plant-centred method indicated lower network modularity and specialization, floral traits modulated the effects of the sampling method on species-level network metrics. Combining animal- and plant-centred approaches returned intermediate values for ß-diversity of interactions and network metrics. Distinct methods may also be better suited for answering questions at different scales. Our results point out that the method choice, or combination of methods, should always reflect the appropriate scale of the factors determining the interactions being investigated.
Assuntos
Ecossistema , Polinização , Animais , Insetos , Plantas , Manejo de Espécimes , Áreas AlagadasRESUMO
The Seriola genus includes species of worldwide commercial importance due to its rapid growth and easy adaptability to confinement conditions. However, like other fish species, large mortalities occur during their early life stages, where the main problems are caused by opportunistic bacteria. Disease control strategies are thus urgently needed. The present study aimed to evaluate the efficacy of phage vB_Pd_PDCC-1 during the early development of longfin yellowtail (Seriola rivoliana), as well as its effect on microbial communities. This broad-host-range phage was added to the culture every 3 days starting from the egg-stage until 12 days after hatching (DAH) at a concentration of 1.41×1010 plaque-forming units (PFU) per mL and at a multiplicity of infection (MOI) of 1. The results showed positive effects (p<0.05) on egg hatching, survival, growth, and pigmentation area in treated larvae. Moreover, high-throughput sequencing analysis of 16S rRNA genes showed that phage administration did not produce significant changes (p>0.05) in the composition and structure of the associated microbiota. However, sequences affiliated to the Gammaproteobacteria class were displaced by those belonging to the Alphaproteobacteria class over time regardless of the treatment received. At the family level, there was a decrease in Rhodobacteraceae, Pseudoalteromonadaceae, and Flavobacteriaceae in both groups over time. To our best knowledge, this study represents the first attempt to evaluate the effect of a phage as a biological control agent during ontogenetic development of longfin yellowtail larvae. KEY POINTS: ⢠Phages can be used against proliferation of Vibrio in fish cultures. ⢠Seriola includes several important commercial fish species due to its rapid growth. ⢠Phages do not cause significant changes in the associated microbiota.
Assuntos
Bacteriófagos , Vibrio , Animais , Bacteriófagos/genética , Peixes , Myoviridae , RNA Ribossômico 16S/genéticaRESUMO
Bird communities in lowland Neotropical forests exhibit temporal and spatial variation in species composition and abundance at multiple scales. Detecting and explaining such variation requires adequate methods for sampling those bird communities but counting birds in highly diverse lowland forests of the Neotropics can be particularly challenging. Point counts are one of the most frequently used methods for counting birds in tropical forests but inter- and intra-observer variability in detecting and identifying sounds may cause problems. Acoustic monitors (passive acoustic monitors; autonomous recording units) provide an alternative and potentially effective method to sample bird communities by acting, in effect, as "point counts", recording vocalizations at a given point for a set time. I used acoustic monitors to examine patterns of species richness, spatial distribution, and community composition of birds in a lowland forest in eastern Ecuador, one of the most diverse regions on earth. I deployed monitors at 25 locations, each separated by at least 200 m, on each of two 100-ha plots (Harpia, Puma) at Tiputini Biodiversity Station during January-February, 2013-2017. Monitors were set to record for 10 min followed by a 5-min break, from 0545 h to 0810 h (10 recording periods/morning). Recordings were later reviewed to identify species; no attempt was made to distinguish individuals or to estimate distance. Results were compared with contemporaneous direct observations along transects on the same plots. A total of 214 species were identified from recordings on both plots, combined, with slightly more on Harpia (208) than on Puma (188). Number per year ranged from 142 on Harpia in 2016 to 161 on Puma in 2015. Number per point was ~45 with an overall range of 29-68. Number of species detected in recordings was similar to but somewhat less than the number recorded during direct observations. Number of species recorded increased rapidly from the first period (0545-0555 h) to the third (0615-0625 h) but showed little subsequent change. Most species were recorded at relatively few points; the four most widely distributed species were the same on both plots (Patagioenas plumbea, Xiphorhynchus guttatus, Capito aurita, Ramphastos tucanus), all of which are relatively loud canopy or subcanopy species. Ordinations based on species composition illustrated differences between plots based on both recordings and direct observations; similarly, patterns of species composition differed between methods. Acoustic monitors can be an effective tool for sampling bird communities and may be particularly effective and efficient for sampling loud species with distinctive songs. Nonetheless, results from monitors may provide different perspectives on species composition when compared to direct observations. Which method is preferred likely will depend on the specific objectives of individual studies.
RESUMO
As one of the most important components of the lake ecosystem, microorganisms from the freshwater and sediment play an important role in many ecological processes. However, the difference and correlation of bacterial community between these two niches were not clear. This study investigated the diversity of microbial community of freshwater and sediment samples from fifteen locations in Poyang Lake wetland. The correlation between the bacterial community and physicochemical property of Poyang Lake wetland was analyzed by artificial neural network (ANN). Our results demonstrated that the freshwater and sediment bacterial community were dominated by groups of the Bacteroidetes (23.33%) and ß-Proteobacteria (22.54%) separately, whereas, Canalipalpata, Bacillariophyta, Gemmatimonadetes, and Verrucomicrobia were detected in freshwater niches only. Phylogenetic analysis further indicated that bacterial composition in freshwater significantly differed with the sediment niches. There are 34 unique species accounted for 85% in fresh water samples and 28 unique species accounted for 82% in sediment samples. Cluster analysis further proved that all the samples from freshwater niches clustered closely together, far from the rest sediment samples. ANN analysis revealed that the freshwater with high N and P nutrients will greatly increase the diversity of the bacterial communities. In general, both environmental physicochemical properties, not each factor independently, contributed to the shift in the bacterial community structure. The five tributaries (Gan, Fu, Xin, Rao, Xiu Rivers) play a vital role in shaping the bacterial communities of Poyang Lake. This study provides new insights for understanding of microbial community compositions and structures of Poyang Lake wetland.
Assuntos
Bactérias/isolamento & purificação , Sedimentos Geológicos/microbiologia , Lagos/microbiologia , Microbiota , Bactérias/classificação , Bactérias/genética , China , Sedimentos Geológicos/química , Lagos/química , Redes Neurais de Computação , Nitrogênio/análise , Nitrogênio/metabolismo , Fósforo/análise , Fósforo/metabolismo , Filogenia , Áreas AlagadasRESUMO
Sarcophagidae (Diptera) are of great interest from a veterinary, medical, and forensic viewpoint, and are potential bioindicators for environmental impact assessments. In this study, we evaluated changes in abundance, species richness, and diversity of flesh flies in different habitat types in the Humid Chaco ecoregion of South America: 1) anthropized habitats: urban, cattle farm, and alfalfa crop, and 2) natural habitats: savanna and forest. We hypothesized that sarcophagid fly community parameters are affected by the anthropization and that spatial turnover will contribute more to the overall beta diversity than nestedness between habitats. In each habitat, samplings were conducted monthly from March 2015 to February 2016 in 25 sites, 5 per habitat, totaling 300 independent samples at the end of the study. We collected 5,790 Sarcophagidae (55 species). Community parameters of Sarcophagidae were evaluated and compared. The ecological effects of anthropization and habitat type were observed in the present study. As expected, our results showed the highest abundance, species richness, and diversity in the savanna and forest habitats (natural), whereas the lowest values were registered in the urban and alfalfa crop habitats, supporting the hypotheses of anthropization as the main driver of diversity loss. In addition, sarcophagid assemblages differed between all habitats and the overall dissimilarity was structured by spatial turnover. The main conclusion of this research is that flesh fly community structure is greatly affected by anthropization and habitat type, and this would be related to canopy cover and microclimate conditions of each environment.
Assuntos
Biodiversidade , Ecossistema , Sarcofagídeos/fisiologia , Animais , Argentina , Cidades , Fazendas , Florestas , Pradaria , MasculinoRESUMO
Lipid supplementation of ruminant diets may trigger changes in the ruminal microbiota and in anaerobic digestion. Changes in the bacterial community composition and in the fatty acid hydrogenation caused by the addition of different supplemental plant oils to a high concentrate diet were investigated in vitro using RUSITEC (rumen simulation technique) fermenters. The control (CTR) diet was a high-concentrate total mixed ration for dairy sheep, with no supplementary oil. The other experimental diets were supplemented with olive (OLV), sunflower (SFL) or linseed (LNS) oils at 6% (dry matter basis). Four RUSITEC fermenters were used for each experimental diet, all inoculated with rumen digesta of sheep. Extent of dry matter and fat degradation, composition of the bacterial community and long-chain fatty acids in digesta were determined. The addition of plant oils increased (P < 0.001) apparent degradation of fat in the fermenters, whereas fermentation kinetics (gas production and average fermentation rate) were lower (P < 0.05) with the LNS than with the CTR diet. Hydrogenation of C18 unsaturated fatty acids (P < 0.05), in particular that of oleic acid (P < 0.001), and stearic acid proportion (P < 0.001) were reduced, and oleic acid proportion was increased (P < 0.001) with all oil supplements. Addition of OLV decreased linoleic and LNS increased α-linolenic (P < 0.001), whereas conjugated linoleic was increased with SFL oil (P = 0.025) and vaccenic increased with both SFL and LNS oils (P = 0.008). Addition of 6% OLV and LNS reduced (P < 0.05) microbial community diversity and quantity of total bacteria relative to the control. Some specific microbial groups were affected (P < 0.001) by oil addition, with less relative abundance of Clostridiales and Actinobacteria and increased Bacteroidales, Aeromonadales and Lactobacillales species. In conclusion, the supplementation of high-concentrate ruminant diets with plant oils, in particular from sunflower or linseed, causes shifts in the rumen microbiota and fatty acid hydrogenation in the rumen increasing the formation of vaccenic and conjugated linoleic acids.
Assuntos
Suplementos Nutricionais , Ácidos Graxos/metabolismo , Fermentação , Microbiota , Óleos de Plantas , Rúmen/microbiologia , Ração Animal/análise , Animais , Técnicas Bacteriológicas , Metagenômica/métodosRESUMO
Wildlife disease dynamics are strongly influenced by the structure of host communities and their symbiotic microbiota. Conspicuous amphibian declines associated with the waterborne fungal pathogen Batrachochytrium dendrobatidis (Bd) have been observed in aquatic-breeding frogs globally. However, less attention has been given to cryptic terrestrial-breeding amphibians that have also been declining in tropical regions. By experimentally manipulating multiple tropical amphibian assemblages harbouring natural microbial communities, we tested whether Bd spillover from naturally infected aquatic-breeding frogs could lead to Bd amplification and mortality in our focal terrestrial-breeding host: the pumpkin toadlet Brachycephalus pitanga. We also tested whether the strength of spillover could vary depending on skin bacterial transmission within host assemblages. Terrestrial-breeding toadlets acquired lethal spillover infections from neighbouring aquatic hosts and experienced dramatic but generally non-protective shifts in skin bacterial composition primarily attributable to their Bd infections. By contrast, aquatic-breeding amphibians maintained mild Bd infections and higher survival, with shifts in bacterial microbiomes that were unrelated to Bd infections. Our results indicate that Bd spillover from even mildly infected aquatic-breeding hosts may lead to dysbiosis and mortality in terrestrial-breeding species, underscoring the need to further investigate recent population declines of terrestrial-breeding amphibians in the tropics.
Assuntos
Anuros/microbiologia , Quitridiomicetos/fisiologia , Longevidade , Microbiota , Micoses/veterinária , Animais , Brasil , Micoses/microbiologia , Pele/microbiologiaRESUMO
There is an interest in controlling rumen methanogenesis as an opportunity to both decrease the emissions of greenhouse gases and improve the energy efficiency of rumen fermentation. However, the effects of inhibiting rumen methanogenesis on fermentation are incompletely understood even in in vitro rumen cultures, as the recovery of metabolic hydrogen ([H]) in the main fermentation products consistently decreases with methanogenesis inhibition, evidencing the existence of unaccounted [H] sinks. We hypothesized that inhibiting methanogenesis in rumen batch cultures would redirect [H] towards microbial amino acids (AA) biosynthesis as an alternative [H] sink to methane (CH4). The objective of this experiment was to evaluate the effects of eight inhibitors of methanogenesis on digestion, fermentation and the production of microbial biomass and AA in rumen batch cultures growing on cellulose. Changes in the microbial community composition were also studied using denaturing gradient gel electrophoresis (DGGE). Inhibiting methanogenesis did not cause consistent changes in fermentation or the profile of AA, although the effects caused by the different inhibitors generally associated with the changes in the microbial community that they induced. Under the conditions of this experiment, inhibiting methanogenesis did not increase the importance of microbial AA synthesis as a [H] sink.
RESUMO
BACKGROUND: Oil palm plantation establishment in Colombia has the potential to impact Chagas disease transmission by increasing the distribution range of Rhodnius prolixus. In fact, previous studies have reported Trypanosoma cruzi natural infection in R. prolixus captured in oil palms (Elaeis guineensis) in the Orinoco region, Colombia. The aim of this study is to understand T. cruzi infection in vectors in oil palm plantations relative to community composition and host dietary specialization by analyzing vector blood meals and comparing these results to vectors captured in a native palm tree species, Attalea butyracea. METHODS: Rhodnius prolixus nymphs (n = 316) were collected from A. butyracea and E. guineensis palms in Tauramena, Casanare, Colombia. Vector blood meals from these nymphs were determined by amplifying and sequencing a vertebrate-specific 12S rRNA gene fragment. RESULTS: Eighteen vertebrate species were identified and pigs (Sus scrofa) made up the highest proportion of blood meals in both habitats, followed by house mouse (Mus musculus) and opossum (Didelphis marsupialis). Individual bugs feeding only from generalist mammal species had the highest predicted vector infection rate, suggesting that generalist mammalian species are more competent hosts for T. cruzi infection . CONCLUSIONS: Oil palm plantations and A. butyracea palms found in altered areas provide a similar quality habitat for R. prolixus populations in terms of blood meal availability. Both habitats showed similarities in vector infection rate and potential host species, representing a single T. cruzi transmission scenario at the introduced oil palm plantation and native Attalea palm interface.
Assuntos
Agricultura , Doença de Chagas/transmissão , Insetos Vetores/parasitologia , Rhodnius/fisiologia , Árvores , Trypanosoma cruzi/isolamento & purificação , Animais , Sangue , Colômbia , Didelphis , Ecossistema , Especificidade de Hospedeiro , Insetos Vetores/fisiologia , Camundongos , Óleo de Palmeira , Rhodnius/parasitologia , SuínosRESUMO
A temporal study of the Calliphoridae fauna was conducted in five different types of habitats in the Humid Chaco ecoregion: an urban settlement, a cattle farm, an alfalfa crop, a savanna, and a forest. Research was carried out to analyze 1) how the species composition of blow fly communities changes across different types of human-modified and wild environments, 2) their seasonal fluctuations, and 3) the influence of climatic factors (relative humidity, temperature, and precipitations) on the temporal dynamics of these communities. In each habitat, five sites were selected for the collection of blow flies using bait traps, and flies were collected for 1 yr. In total, 32,100 blow flies were collected, distributed in five genera and 11 species. The native species Cochliomyia macellaria (Fabricius) (Diptera: Calliphoridae) was the most abundant, followed by the exotic Chrysomya putoria (Wiedemann) (Diptera: Calliphoridae). The abundance of exotic species represented 59.9% of the total sample, showing a reduction toward less disturbed sites. The Calliphorid communities were compared in terms of species richness, composition, and abundance between habitats and seasons. Our results showed that the habitat type and season affect the composition of blow fly communities. The alfalfa crop and the forest showed the highest diversity of species. In general, there was a decrease in blow fly activity during winter in all habitats. The climatic factors did not greatly affect the diversity of these flies. This study provides a first understanding of several ecological aspects of the Calliphoridae assemblages of the previously unsurveyed Humid Chaco ecoregion of South America.