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1.
Mol Pharm ; 21(4): 1719-1728, 2024 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-38411904

RESUMEN

Therapeutic proteins with a high concentration and low viscosity are highly desirable for subcutaneous and certain local injections. The shape of a protein is known to influence solution viscosity; however, the precise quantification of protein shape and its relative impact compared to other factors like charge-charge interactions remains unclear. In this study, we utilized seven model proteins of varying shapes and experimentally determined their shape factors (v) based on Einstein's viscosity theory, which correlate strongly with the ratios of the proteins' surface area to the 2/3 power of their respective volumes, based on protein crystal structures resolved experimentally or predicted by AlphaFold. This finding confirms the feasibility of computationally estimating protein shape factors from amino acid sequences alone. Furthermore, our results demonstrated that, in high-concentration electrolyte solutions, a more spherical protein shape increases the protein's critical concentration (C*), the transition concentration beyond which protein viscosity increases exponentially relative to concentration increases. In summary, our work elucidates protein shape as a key determinant of solution viscosity through quantitative analysis and comparison with other contributing factors. This provides insights into molecular engineering strategies to optimize the molecular design of therapeutic proteins, thus optimizing their viscosity.


Asunto(s)
Anticuerpos Monoclonales , Electrólitos , Anticuerpos Monoclonales/química , Viscosidad , Soluciones/química
2.
J Fluoresc ; 2023 Dec 23.
Artículo en Inglés | MEDLINE | ID: mdl-38141145

RESUMEN

Structural, optical, photoluminescence and colorimetric analyses of Gd (1-5 mol %) doped BNT ceramics synthesized by the solid-state reaction technique are reported. Structural analyses of all the samples are done by the X-ray diffraction method. It is shown that the samples have rhombohedral crystal structures with an R3C space group. The energy band gap of all the phosphors is computed from the UV-visible absorbance spectra. Photoluminescence behaviors are analyzed from the excitation along with the emission spectra of the prepared materials. The critical quenching concentration with the critical energy transfer distance is observed owing to the dipole-dipole interactions between the materials. Colorimetric analyses are carried out with the help of CIE chromaticity. Moreover, the color purity, correlated color temperature, color rendering index, and luminous efficiency of radiation values are evaluated by using the chromaticity coordinates.

3.
Int J Mycobacteriol ; 12(3): 316-323, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37721239

RESUMEN

Background: Fluoroquinolones (FQs) have substantial activity against the Mycobacterium tuberculosis complex (MTBc) by preventing bacterial DNA synthesis through DNA gyrase inhibition. The reference standard for FQ-resistance testing is phenotypic drug-susceptibility testing (pDST) based on growth inhibition of MTBc in drug-containing Mycobacteria Growth Indicator Tube system (MGIT) media at a critical concentration (CC) that differentiates phenotypically wild-type from nonwild-type MTBc and at a clinical breakpoint that identifies strains that will likely still respond to treatment at higher doses. Despite the recent introduction of powerful new TB drugs, highly sensitive detection of clinically defined FQ resistance remains key. Method: In this study, we re-evaluated the current WHO-recommended CCs of Lfx (1.0 mg/ml), Mfx (0.25 mg/ml), Gfx (0.25 µg/ml), and the nowadays, obsolete CC of Ofx (2.0 mg/ml) for MGIT, using 147 MTBc isolates with known gyrA and gyrB sequences including both high-and low-level FQ resistance-conferring mutants. We tested a wide range of drug concentrations covering the current and former/obsolete WHO-recommended CCs for FQs and some intermediate concentrations to challenge the current WHO-recommended CCs. Results: The specificity of all four CCs was 100%. The sensitivities varied: 92.4% for Ofx and Lfx, 85.7% for Mfx, and 83.2% for Gfx. Lowering the CC of Mfx to 0.125 mg/ml would allow to correctly classify all wild-type and mutant isolates while lowering the CC of Gfx to 0.125 mg/ml would still misclassify some gyrA/gyrB mutants as susceptible. Conclusion: Based on our findings, a minimal inhibitory concentration of 0.125 mg/ml on MGIT medium is a more appropriate CC for Mfx and probably also as a surrogate for overall FQ resistance in the MTBc.


Asunto(s)
Fluoroquinolonas , Mycobacterium tuberculosis , Humanos , Fluoroquinolonas/farmacología , Girasa de ADN/genética , Pruebas de Sensibilidad Microbiana , Antituberculosos/farmacología , Mutación , Farmacorresistencia Bacteriana/genética
4.
Chemphyschem ; 24(19): e202300439, 2023 10 04.
Artículo en Inglés | MEDLINE | ID: mdl-37477386

RESUMEN

Nucleation and growth of amyloid fibrils were found to only occur in supersaturated solutions above a critical concentration (ccrit ). The biophysical meaning of ccrit remained mostly obscure, since typical low values of ccrit in the sub-µM range hamper investigations of potential oligomeric states and their structure. Here, we investigate the parathyroid hormone PTH84 as an example of a functional amyloid fibril forming peptide with a comparably high ccrit of 67±21 µM. We describe a complex concentration dependent prenucleation ensemble of oligomers of different sizes and secondary structure compositions and highlight the occurrence of a trimer and tetramer at ccrit as possible precursors for primary fibril nucleation. Furthermore, the soluble state found in equilibrium with fibrils adopts to the prenucleation state present at ccrit . Our study sheds light onto early events of amyloid formation directly related to the critical concentration and underlines oligomer formation as a key feature of fibril nucleation. Our results contribute to a deeper understanding of the determinants of supersaturated peptide solutions. In the current study we present a biophysical approach to investigate ccrit of amyloid fibril formation of PTH84 in terms of secondary structure, cluster size and residue resolved intermolecular interactions during oligomer formation. Throughout the investigated range of concentrations (1 µM to 500 µM) we found different states of oligomerization with varying ability to contribute to primary fibril nucleation and with a concentration dependent equilibrium. In this context, we identified the previously described ccrit of PTH84 to mark a minimum concentration for the formation of homo-trimers/tetramers. These investigations allowed us to characterize molecular interactions of various oligomeric states that are further converted into elongation competent fibril nuclei during the lag phase of a functional amyloid forming peptide.


Asunto(s)
Amiloide , Hormona Paratiroidea , Modelos Moleculares , Amiloide/química , Péptidos , Estructura Secundaria de Proteína , Proteínas Amiloidogénicas , Péptidos beta-Amiloides/química
5.
J Phys Condens Matter ; 35(32)2023 May 11.
Artículo en Inglés | MEDLINE | ID: mdl-37094575

RESUMEN

Atomic transport properties specifically the shear viscosity and the diffusion coefficient for ZnxBi1-xliquid monotectic segregating alloys are theoretically investigated by using the Rice-Allnatt theory. The essential ingredient for the microscopic description of the metals and their alloys is the interionic interaction which in the present work is described by a widely used local pseudopotential. The temperature dependent behaviour of the above mentioned physical properties is also examined. The overall agreement of our calculated results with the available experimental data is found to be good for the full range of concentration. More interestingly, the temperature dependent results for the viscosity and the diffusion coefficient apparently exhibit a signature of liquid-liquid phase separation through a sudden bending in their concentration dependent profiles. Onset of this bending also provides information about the critical temperature and the critical concentration, and also provides a value for the critical exponent of liquid-liquid phase separation.

6.
Materials (Basel) ; 16(2)2023 Jan 04.
Artículo en Inglés | MEDLINE | ID: mdl-36676235

RESUMEN

Anionic surfactants, such as sodium linear alkylbenzene sulfonates (NaLAS), are utilized in various fields, including industry, household, and agriculture. The efficiency of their use in aqueous environments is significantly affected by the presence of cations, Ca2+ and Mg2+ in particular, as they can decrease the concentration of the surfactant due to precipitation. To understand cation-sulfonate interactions better, we study both NaLAS colloidal solutions in the presence of CaCl2 and precipitates forming at higher salt concentrations. Upon addition of CaCl2, we find the surface tension and critical micelle concentration of NaLAS to decrease significantly, in line with earlier findings for alkylbenzylsulfonates in the presence of divalent cations. Strikingly, an increase in the surface tension is discernible above 0.6 g L-1 NaLAS, accompanied by the decrease of apparent micelle sizes, which in turn gives rise to transparent systems. Thus, there appears to be a second critical concentration indicating another micellar equilibrium. Furthermore, the maximum salt tolerance of the surfactant is 0.1 g L-1 Ca2+, above which rapid precipitation occurs yielding sparingly soluble CaLAS2∙2H2O.

7.
J Clin Microbiol ; 61(1): e0108622, 2023 01 26.
Artículo en Inglés | MEDLINE | ID: mdl-36602360

RESUMEN

The World Health Organization recently lowered the rifampin (RIF) critical concentration (CC) for drug-susceptibility testing (DST) of Mycobacterium tuberculosis complex (MTBC) using the mycobacterial growth indicator tube (MGIT) 960 system. Here, we evaluated the diagnostic performance of the MGIT system with the revised CC for determining MTBC RIF resistance with 303 clinical MTBC isolates, including 122 isolates with rpoB mutations, of which 32 had single borderline-resistance mutations, and 181 wild-type rpoB isolates. The phenotypic RIF resistance was determined via the absolute concentration method (AC) and via MGIT using both previous (1 mg/L) and revised (0.5 mg/L) CCs for the latter method. The diagnostic accuracy of each phenotypic DST (pDST) was assessed based on rpoB genotyping as the reference standard. The overall sensitivity of the AC was 95.1% (95% confidence interval [CI], 89.6 to 98.2%), while the MGIT results with previous and revised CCs were 82.0% (95% CI 74.0 to 88.3%) and 83.6% (95% CI 75.8 to 89.7%), respectively. The 32 MTBC isolates with single borderline-resistance mutations showed a wide range of MICs, and sensitivity was not significantly increased by reducing the MGIT CC. All 181 wild-type rpoB isolates were RIF-susceptible in the AC and with MGIT using the previous CC, whereas 1 isolate was misclassified as RIF-resistant with the revised CC. Our results demonstrate that the overall diagnostic performances of the MGIT DST with the revised RIF CC and previous CC were comparable. A further large-scale study is required to demonstrate the optimal RIF CC for MGIT.


Asunto(s)
Mycobacterium tuberculosis , Tuberculosis Resistente a Múltiples Medicamentos , Humanos , Antituberculosos/farmacología , ARN Polimerasas Dirigidas por ADN/genética , Pruebas de Sensibilidad Microbiana , Mutación , Rifampin/farmacología , Evaluación Preclínica de Medicamentos
8.
Ann Clin Microbiol Antimicrob ; 21(1): 48, 2022 Nov 05.
Artículo en Inglés | MEDLINE | ID: mdl-36335391

RESUMEN

BACKGROUND & OBJECTIVES: Accurate determination of antimicrobial resistance profiles is of great importance to formulate optimal regimens against multidrug-resistant tuberculosis (MDR-TB). Although para-aminosalicylic acid (PAS) has been widely used clinically, the reliable testing methods for PAS susceptibility were not established. Herein, we aimed to establish critical test concentration for PAS on the Mycobacterial Growth Indicator Tube (MGIT) 960 in our laboratory settings. METHODS: A total of 102 clinical isolates were included in this study, including 82 wild-type and 20 resistotype isolates. Minimum inhibitory concentration (MIC) was determined by MGIT 960. Whole-genome sequencing was used to identify the mutation patterns potentially conferring PAS resistance. Sequence alignment and structure modelling were carried out to analyze potential drug-resistant mechanism of folC mutant. RESULTS: Overall, the Minimum inhibitory concentration (MIC) distribution demonstrated excellent separation between wild-type and resistotype isolates. The wild-type population were all at least 1 dilution below 4 µg/ml, and the resistotype population were no lower than 4 µg/ml, indicating that 4 µg/ml was appropriate critical concentration to separate these two populations. Of 20 mutant isolates, 12 (60.0%) harbored thyA mutations, 2 (10%) had a mutation on upstream of dfrA, and the remaining isolates had folC mutations. Overall, thyA and folC mutations were scattered throughout the whole gene without any one mutation predominating. All mutations within thyA resulted in high-level resistance to PAS (MIC > 32 µg/ml); whereas the MICs of isolates with folC mutations exhibited great diversity, ranged from 4 to > 32 µg/ml, and sequence and structure analysis partially provided the possible reasons for this diversity. CONCLUSIONS: We propose 4 µg/ml as tentative critical concentration for MGIT 960. The major mechanism of PAS resistance is mutations within thyA and folC in MTB isolations. The whole-gene deletion of thyA locus confers high-level resistance to PAS. The diversity of many distinct mutations scattered throughout the full-length folC gene challenges the PCR-based mutation analysis for PAS susceptibility.


Asunto(s)
Ácido Aminosalicílico , Mycobacterium tuberculosis , Tuberculosis Resistente a Múltiples Medicamentos , Humanos , Mycobacterium tuberculosis/genética , Ácido Aminosalicílico/farmacología , Pruebas de Sensibilidad Microbiana , Antituberculosos/farmacología , Farmacorresistencia Bacteriana/genética , Tuberculosis Resistente a Múltiples Medicamentos/microbiología , Mutación
9.
Int J Mycobacteriol ; 11(2): 183-189, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35775551

RESUMEN

Background: Recently, moxifloxacin (MFX)-resistant results of Mycobacterium tuberculosis (Mtb) obtained by GenoType MTBDRsl (second-line line probe assay [SL-LPA]) have been stratified to determine their resistance level; however, its accuracy has not been well studied. Therefore, the study aimed to evaluate the diagnostic accuracy of SL-LPA, with phenotypic drug susceptibility testing (pDST) and whole-genome sequencing (WGS) for the detection of MFX-resistant Mtb and their resistance level. Methods: A total of 111 sputum samples were subjected to SL-LPA according to the diagnostic algorithm of the National Tuberculosis Elimination Program. Results were compared with pDST of MFX (at critical concentration [CC, 0.25 µg/ml] and clinical breakpoint [CB, 1.0 µg/ml] using BACTEC mycobacterial growth indicator tube-960), and WGS. Results: At CC, SL-LPA and pDST yielded concordant results of MFX for 104 of 111 (94%). However, at CB, 23 of 30 (77%) isolates carrying gyrA mutation known to confer low-level resistance to MFX were scored as susceptible by pDST. Among 46 Mtb isolates carrying gyrA mutations known to confer high-level resistance to MFX, 36 (78%) isolates yielded concordant results, while 10 (22%) isolates were scored as susceptible at CB by pDST. WGS identified gyrA mutations in all isolates suggested by SL-LPA. Conclusion: It is concluded that the stratification of MFX-resistant results by SL-LPA/genotypic method is not very well correlated with pDST (at CB), and hence, pDST may not be completely replaced by SL-LPA. gyrA D94G and gyrAA90V are the most prevalent mutations in MFX-resistant Mtb.


Asunto(s)
Mycobacterium tuberculosis , Antituberculosos/farmacología , Genotipo , Humanos , Pruebas de Sensibilidad Microbiana , Moxifloxacino/farmacología
10.
Int J Biol Macromol ; 202: 46-54, 2022 Mar 31.
Artículo en Inglés | MEDLINE | ID: mdl-35038466

RESUMEN

The application of polysaccharides in the food industry mainly depends on their rheological properties and the polysaccharides in different concentration regions exhibit different rheological properties due to the interactions between polymer chains. Hence, this work investigated the concentration-dependent rheological behavior of Lignosus rhinocerotis polysaccharide (LRP) in water and determined the critical concentrations. The intrinsic viscosity of LRP was 378 ± 32 mL/g and the LRP exhibited more apparent shear-thinning behavior with increasing concentration. The LRP critical overlap and aggregation concentration in water was ~ 2.5 mg/mL, implicating the formation of hydrophobic regions may result from the aggregation and overlap between hyperbranched LRP molecules. The LRP/water system showed higher storage modulus than loss modulus with slight frequency dependence at the concentration of 15 mg/mL, exhibiting the structured liquid behavior. When the concentration increased from 10 mg/mL to 30 mg/mL, the compliance recovery percentage value increased from 58.51% to 92.30%, indicating the formation of a strong gel network in the LRP/water system. Furthermore, the micro-rheological test revealed that the LRP/water system exhibited a concentration-dependent increase in elasticity and viscosity and deterioration in fluidity.


Asunto(s)
Polyporaceae , Polisacáridos , Elasticidad , Polyporaceae/química , Polisacáridos/química , Reología , Viscosidad
11.
Nutrients ; 13(5)2021 Apr 21.
Artículo en Inglés | MEDLINE | ID: mdl-33919341

RESUMEN

Soluble dietary fibers (SDF) are known to reduce the post-prandial plasma glucose levels. However, the detailed mechanisms of this reduced glucose release in the human gut still remain unclear. The aim of our study was to systematically investigate the effect of different types of SDF on glucose release in an in vitro model as a prerequisite for the selection of fibers suitable for application in humans. Three types of carboxymethyl cellulose (CMC) were used to investigate the correlations between fiber concentration, molecular weight (MW), and viscosity on diffusion of glucose using a side-by-side system. CMC solutions below the coil overlap (c*) influenced the glucose diffusivity only marginally, whereas at concentrations above c* the diffusion of glucose was significantly decreased. Solutions of lower MW exhibited a lower viscosity with lower glucose diffusion compared to solutions with higher MW CMC, attributed to the higher density of the solutions. All CMC solutions showed a systematic positive deviation from Stokes-Einstein behavior indicating a greater rise in viscosity than reduction in diffusion. Therefore, our results pave the way for a new approach for assessing glucose diffusion in solutions comprising dietary fibers and may contribute to further elucidating the mechanisms of post-prandial plasma glucose level reduction.


Asunto(s)
Carboximetilcelulosa de Sodio/química , Fenómenos Químicos , Glucosa/metabolismo , Convección , Difusión , Peso Molecular , Reología , Soluciones , Factores de Tiempo , Viscosidad
12.
Cytoskeleton (Hoboken) ; 78(9): 436-447, 2021 09.
Artículo en Inglés | MEDLINE | ID: mdl-35233933

RESUMEN

Microtubules (MTs) form physiologically important cytoskeletal structures that are assembled by tubulin polymerization in nucleation- and guanosine triphosphate (GTP)-dependent manner. GTP hydrolysis competes with the addition of monomers, to determine the GTP-cap size, and the onset of shrinkage, which alternates with growth. Multiple theoretical models of MT polymerization dynamics have been reconciled to the kinetics of animal brain tubulins, but more recently, rapid kinetics seen in Arabidopsis tubulin polymerization suggest the need to sample a wider diversity in tubulin polymerization kinetics and reconcile it to theory. Here, we isolated tubulin from seedlings of Vigna sp. (mung bean), compared polymerization kinetics to animal brain tubulin, and used a computational model to understand the differences. We find that activity-isolated mung tubulin polymerizes in a nucleation-dependent manner, based on turbidimetry, qualitatively similar to brain tubulin, but with a 10-fold smaller critical concentration. GTP-dependent polymerization kinetics also appear to be transient, indicative of high rates of GTP hydrolysis. Computational modeling of tubulin nucleation and vectorial GTP hydrolysis to examine the effects of high nucleation and GTP-hydrolysis rates predicts a dominance of the latter in determining MT lengths and numbers. Microscopy of mung tubulin filaments stabilized by GMPCPP or taxol results in few and short MTs, compared to the many long MTs arising from goat tubulin, qualitatively matching the model predictions. We find GTP-hydrolysis outcompetes nucleation rates in determining MT lengths and numbers.


Asunto(s)
Plantones , Tubulina (Proteína) , Animales , Guanosina Trifosfato , Hidrólisis , Cinética , Microtúbulos/metabolismo , Polimerizacion , Plantones/metabolismo , Tubulina (Proteína)/metabolismo
13.
ACS Sens ; 6(2): 355-363, 2021 02 26.
Artículo en Inglés | MEDLINE | ID: mdl-32449344

RESUMEN

Electrolytic gas evolution is a significant phenomenon in many electrochemical technologies from water splitting, chloralkali process to fuel cells. Although it is known that gas evolution may substantially affect the ohmic resistance and mass transfer, studies focusing on the electrochemistry of individual bubbles are critical but also challenging. Here, we report an approach using scanning electrochemical cell microscopy (SECCM) with a single channel pipet to quantitatively study individual gas bubble nucleation on different electrode substrates, including conventional polycrystalline Pt and Au films, as well as the most interesting two-dimensional semiconductor MoS2. Due to the confinement effect of the pipet, well-defined peak-shaped voltammetric features associated with single bubble nucleation and growth are consistently observed. From stochastic bubble nucleation measurement and finite element simulation, the surface H2 concentration corresponding to bubble nucleation is estimated to be ∼218, 137, and 157 mM, with critical nuclei contact angles of ∼156°, ∼161°, and ∼160° at polycrystalline Pt, Au, and MoS2 substrates, respectively. We further demonstrated the surface faceting at polycrystalline Pt is not specifically correlated with the bubble nucleation behavior.


Asunto(s)
Molibdeno , Agua , Electrólitos
14.
Front Microbiol ; 11: 1182, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32695072

RESUMEN

The World Health Organization (WHO) has developed specific guidelines for critical concentrations (CCs) of antibiotics used for tuberculosis (TB) treatment, which is universally followed for drug susceptibility testing (DST) of clinical specimens. However, the CC of drugs can differ significantly among the mycobacterial species based on the population, geographic location, and the prevalence of the infecting strain in a particular area. The association between CC and the minimal inhibitory concentration (MIC) of anti-TB drugs is poorly understood. In this study, we assessed the MICs of anti-TB drugs, including isoniazid (INH), rifampicin (RMP), moxifloxacin (MXF), ethambutol (ETH), and p-aminosalicylic acid (PAS) on drug-sensitive Mtb isolates from pulmonary TB patients in South India. The MIC assays performed using solid- and liquid-growth media showed changes in the CC of a few of the tested antibiotics compared with the WHO-recommended levels. Our observation suggests that the WHO guidelines could potentially lead to overdiagnosis of drug-resistant cases, which can result in inappropriate therapeutic decisions. To evaluate the correlation between drug-resistance and CC, we performed the whole-genome sequencing for 16 mycobacterial isolates, including two wild-type and 14 resistant isolates. Our results showed that two of the isolates belonged to the W-Beijing lineage, while the rest were of the East-African-Indian type. We identified a total of 74 mutations, including five novel mutations, which are known to be associated with resistance to anti-TB drugs in these isolates. In our previous study, we determined the serum levels of INH and RMP among the same patients recruited in the current study and estimated the MICs of the corresponding infected isolates in these cases. Using these data and the CCs for INH and RMP from the present study, we performed pharmacodynamics (PD) evaluation. The results show that the PD of RMP was subtherapeutic. Together, these observations emphasize the need for optimizing the drug dosage based on the PD of large-scale studies conducted in different geographical settings.

15.
Plant Physiol Biochem ; 144: 234-243, 2019 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-31590092

RESUMEN

Photosynthetic processes in the chloroplast depend on the abundance of magnesium (Mg) in relatively high amounts; hence chloroplasts might react more sensitive to Mg-deficiency than other physiological processes within other organelles. Most authors suggest a critical Mg concentration to be 1.5 mg g-1 DM for biomass and yield formation. However, it is not yet elucidated whether this value also applies to photosynthetic processes. The present study focused on the response of photosynthetic processes to different Mg tissue concentrations. Wheat (Triticum aestivum) and sunflower (Helianthus annuus) plants were grown hydroponically for 10 days with 8 different levels of Mg supply (1.0, 0.5, 0.25, 0.1, 0.075, 0.05, 0.025, 0.01 mM Mg). Specific leaf mass, SPAD values, assimilation rate, Fv/Fm, electron transport rate and photochemical and non-photochemical quenching parameters were determined on youngest mature leaves. Tissue Mg concentrations decreased with lowering Mg supply to lowest concentrations of 0.7 mg g-1 DM in wheat leaves, but photosynthetic capacity was not affected. In sunflower leaves, lowest Mg concentrations of 0.56 mg g-1 DM were achieved and a diminished photosynthetic capacity was observed. The study shows that a Mg tissue concentration of 1.5 mg g-1 DM did not induce a negative effect on the photosynthetic capacity of wheat and sunflower leaves under our experimental conditions and hence, the critical Mg concentration for photosynthetic processes might be lower than for biomass and yield formation.


Asunto(s)
Helianthus/metabolismo , Magnesio/metabolismo , Plantones/metabolismo , Triticum/metabolismo , Clorofila/metabolismo , Cloroplastos/metabolismo , Helianthus/fisiología , Fotosíntesis/genética , Fotosíntesis/fisiología , Plantones/fisiología , Triticum/fisiología
16.
Cytoskeleton (Hoboken) ; 76(11-12): 495-516, 2019 11.
Artículo en Inglés | MEDLINE | ID: mdl-31403242

RESUMEN

Behaviors of dynamic polymers such as microtubules and actin are frequently assessed at one or both of the following scales: (a) net assembly or disassembly of bulk polymer, (b) growth and shortening of individual filaments. Previous work has derived various forms of an equation to relate the rate of change in bulk polymer mass (i.e., flux of subunits into and out of polymer, often abbreviated as "J") to individual filament behaviors. However, these versions of the "J equation" differ in the variables used to quantify individual filament behavior, which correspond to different experimental approaches. For example, some variants of the J equation use dynamic instability parameters, obtained by following particular individual filaments for long periods of time. Another form of the equation uses measurements from many individuals followed over short time steps. We use a combination of derivations and computer simulations that mimic experiments to (a) relate the various forms of the J equation to each other, (b) determine conditions under which these J equation forms are and are not equivalent, and (c) identify aspects of the measurements that can affect the accuracy of each form of the J equation. Improved understanding of the J equation and its connections to experimentally measurable quantities will contribute to efforts to build a multiscale understanding of steady-state polymer behavior.


Asunto(s)
Citoesqueleto/fisiología , Microtúbulos/fisiología , Modelos Teóricos , Polímeros/química , Tubulina (Proteína)/fisiología , Animales , Simulación por Computador , Humanos , Cinética
17.
Front Plant Sci ; 10: 766, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31275333

RESUMEN

Magnesium (Mg) deficiency in plants is a widespread problem affecting productivity and quality in agricultural systems and forestry. Although numerous studies addressed the effect of Mg deficiency on biomass and photosynthetic CO2 assimilation, a summary evaluation of the effect of Mg supply on plant growth and photosynthesis is so far missing. We performed a systematic review and meta-analysis to collect and combine all relevant scientifically published data on the relationship between Mg nutrition and parameters that can be related to plant growth such as root and shoot biomass, harvestable yield, net CO2 assimilation and antioxidant enzyme activities. Moreover, this data pool was used to calculate critical Mg leaf concentrations for biomass and net CO2 assimilation for various plant species. Summarizing all studies included in our analysis, adequate Mg supply enhances net CO2 assimilation by 140%, leading to a biomass increase of 61% compared to Mg deficient control plants. Biomass partitioning between shoot and root is not only sensitive to Mg nutrition, but highly affected by the experimental cultivation technique. If plants are grown under adequate Mg supply during initial growth stages before exposing them to Mg deficiency, the shoot-root ratio was not affected. Otherwise, the shoot-root ratio significantly decreased in contrast to Mg deficient control plants. Concentration of reactive oxygen species decreased under adequate Mg supply by 31% compared to Mg deficient plants, resulting in decreased activities of most antioxidant enzymes and metabolites under adequate Mg supply. We combined all published data relating leaf Mg concentrations to growth and found a critical leaf Mg range for dry weight between 0.1 and 0.2% which was valid for numerous crop species such as wheat, potato, rice, maize, sorghum and barley. Critical leaf Mg concentrations for net CO2 assimilation were higher than for biomass for most species, e.g., potato, rice, citrus, and cotton. In conclusion, our evaluation can be used to identify Mg nutritional status in plants and may help to optimize fertilization strategies. It quantifies the demand of Mg for various crop and tree species for maintaining important physiological processes such as net CO2 assimilation that is required for optimal plant growth and yield.

18.
Biochim Biophys Acta Proteins Proteom ; 1867(7-8): 701-709, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31096048

RESUMEN

BACKGROUND: Aggregation of the neuronal protein α-synuclein into amyloid fibrils is a hallmark of Parkinson's disease. The propensity of α-synuclein to aggregate increases with the protein concentration. For the development of efficient inhibitors of α-synuclein aggregation, it is important to know the critical concentration of aggregation (the concentration of monomeric protein, below which the protein does not aggregate). METHODS: We performed in vitro aggregation studies of α-synuclein at low concentrations (0.11-20 µM). Aggregation kinetics was measured by ThT fluorescence. Obtained aggregates were characterized using CD-spectroscopy, fluorescent spectroscopy, dynamic light scattering and AFM imaging. RESULTS: Monomeric α-synuclein at concentrations 0.45 µM and above was able to bind to fibril ends resulting in fibril growth. At the protein concentrations below 0.4 µM, monomers did not fibrillize, and fibrils disaggregated. In the absence of seeds, fibrils were formed only at monomer concentrations higher than 10 µM. At low micromolar concentrations, we observed formation of prefibrillar amyloid aggregates, which are able to induce fibril formation in α-synuclein solutions of high concentrations. CONCLUSIONS: The critical concentration of α-synuclein fibril growth is ~0.4 µM. Prefibrillar amyloid aggregates appear at concentrations between 0.45 and 3 µM and are an intermediate state between monomers and fibrils. Although morphologically different from fibrils, prefibrillar aggregates have similar properties to those of fibrils. GENERAL SIGNIFICANCE: We determined the critical concentration of α-synuclein fibril growth. We showed that fibrils can grow at much lower monomer concentrations than that required for de novo fibril formation. We characterized a prefibrillar intermediate species formed upon aggregation of α-synuclein at low micromolar concentration.


Asunto(s)
Amiloide/química , Agregado de Proteínas , alfa-Sinucleína/química , Amiloide/metabolismo , Dicroismo Circular , Humanos , Espectrometría de Fluorescencia , alfa-Sinucleína/metabolismo
19.
Pharm Dev Technol ; 24(8): 954-966, 2019 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-30907675

RESUMEN

The present study is based on the fundamentals of percolation theory and its application in understanding compression and compaction of powder materials. Four materials, i.e. carbamazepine, microcrystalline cellulose, crospovidone and croscarmellose sodium, with dissimilar deformation and compaction behavior were selected to validate the hypotheses of percolation phenomenon. The values of two percolation thresholds, i.e. bond and site, corresponding to the lower and intermediate compression pressures, were determined using Heckel equation. The compactibility of powder materials was evaluated using classical models as well as the power law equation. The values of percolation thresholds were found to better assess the deformation behavior of powder materials compared to the values of mean yield pressure. The power law equation demonstrated better prediction of compactibility of powder materials compared to the classical models. The value of the critical exponent, q, determined using power law equation by plotting tensile strength vs. normalized relative density of powder compacts was found to be closer to the theoretical value of 2.70. Furthermore, the theoretical knowledge of percolation thresholds of individual powder components in the binary mixture was found to be helpful in improving compaction properties of the poorly compactible material, i.e. carbamazepine. Thus percolation theory can be helpful in predicting compression and compaction behavior of powder materials and serve as a potent tool for the successful design of tablet formulations.


Asunto(s)
Comprimidos/química , Carbamazepina/química , Carboximetilcelulosa de Sodio/química , Celulosa/química , Química Farmacéutica/métodos , Composición de Medicamentos/métodos , Excipientes/química , Povidona/química , Polvos/química , Presión , Resistencia a la Tracción
20.
Lab Med ; 50(3): 292-297, 2019 Jul 16.
Artículo en Inglés | MEDLINE | ID: mdl-30806669

RESUMEN

OBJECTIVE: To determine the critical concentration of rifabutin (RFB) for susceptibility testing against Mycobacterium tuberculosis (Mtb) on Löwenstein-Jensen (L-J) medium using the proportion method. METHODS: We used 47 strains were used to determine the critical concentration of RFB. The microplate antimicrobial assay (MABA) was used as a reference method. We used 160 strains to evaluate its correlation with the classification results derived from the MABA method. We performed antimicrobial susceptibility testing (AST) against RFB and rifampin (RIF) for 2748 other strains using the proportion method on L-J medium. RESULTS: The determined critical concentration for RFB was 20 µg per mL. Identical classification as susceptible or resistant was observed in 93.8% and 92.5% strains for RFB and RIF, respectively, using the 2 different methods. The cross-resistance ratio between RFB and RIF was 72.7% in the 2748 Mtb strains. CONCLUSIONS: We determined that a critical concentration of 20 µg per mL RFB was reliable for AST of Mtb.


Asunto(s)
Antibióticos Antituberculosos/farmacología , Medios de Cultivo/química , Pruebas de Sensibilidad Microbiana/métodos , Mycobacterium tuberculosis/efectos de los fármacos , Mycobacterium tuberculosis/crecimiento & desarrollo , Rifabutina/farmacología , Rifampin/farmacología
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