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Objective.Various artifacts in electroencephalography (EEG) are a big hurdle to prevent brain-computer interfaces from real-life usage. Recently, deep learning-based EEG denoising methods have shown excellent performance. However, existing deep network designs inadequately leverage inter-channel relationships in processing multi-channel EEG signals. Typically, most methods process multi-channel signals in a channel-by-channel way. Considering the correlations among EEG channels during the same brain activity, this paper proposes utilizing channel relationships to enhance denoising performance.Approach.We explicitly model the inter-channel relationships using the self-attention mechanism, hypothesizing that these correlations can support and improve the denoising process. Specifically, we introduce a novel denoising network, named spatial-temporal fusion network (STFNet), which integrates stacked multi-dimension feature extractor to explicitly capture both temporal dependencies and spatial relationships.Main results.The proposed network exhibits superior denoising performance, with a 24.27% reduction in relative root mean squared error compared to other methods on a public benchmark. STFNet proves effective in cross-dataset denoising and downstream classification tasks, improving accuracy by 1.40%, while also offering fast processing on CPU.Significance.The experimental results demonstrate the importance of integrating spatial and temporal characteristics. The computational efficiency of STFNet makes it suitable for real-time applications and a potential tool for deployment in realistic environments.

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The prestige target selectivity and imaging depth of optical-resolution photoacoustic microscope (OR-PAM) have gained attentions to enable advanced intra-cellular visualizations. However, the broad-band nature of photoacoustic signals is prone to noise and artifacts caused by the inefficient light-to-pressure translation, resulting in poor image quality. The present study foresees application of singular value decomposition (SVD) to effectively extract the photoacoustic signals from these noise and artifacts. Although spatiotemporal SVD succeeded in ultrasound flow signal extraction, the conventional multi frame model is not suitable for data acquired with scanning OR-PAM due to the burden of accessing multiple frames. To utilize SVD on the OR-PAM, this study began with exploring SVD applied on multiple A-lines of photoacoustic signal instead of frames. Upon explorations, an obstacle of uncertain presence of unwanted singular vectors was observed. To tackle this, a data-driven weighting matrix was designed to extract relevant singular vectors based on the analyses of temporal-spatial singular vectors. Evaluation on the extraction capability by the SVD with the weighting matrix showed a superior signal quality with efficient computation against past studies. In summary, this study contributes to the field by providing exploration of SVD applied on A-line signals as well as its practical utilization to distinguish and recover photoacoustic signals from noise and artifact components.

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Introduction: Surface electromyogram (sEMG) signals have been widely used in human upper limb force estimation and motion intention recognition. However, the electrocardiogram(ECG) artifact generated by the beating of the heart is a major factor that reduces the quality of the EMG signal when recording the sEMG signal from the muscle close to the heart. sEMG signals contaminated by ECG artifacts are difficult to be understood correctly. The objective of this paper is to effectively remove ECG artifacts from sEMG signals by a novel method. Methods: In this paper, sEMG and ECG signals of the biceps brachii, brachialis, and triceps muscle of the human upper limb will be collected respectively. Firstly, an improved multi-layer wavelet transform algorithm is used to preprocess the raw sEMG signal to remove the background noise and power frequency interference in the raw signal. Then, based on the theory of blind source separation analysis, an improved Fast-ICA algorithm was constructed to separate the denoising signals. Finally, an ECG discrimination algorithm was used to find and eliminate ECG signals in sEMG signals. This method consists of the following steps: 1) Acquisition of raw sEMG and ECG signals; 2) Decoupling the raw sEMG signal; 3) Fast-ICA-based signal component separation; 4) ECG artifact recognition and elimination. Results and discussion: The experimental results show that our method has a good effect on removing ECG artifacts from contaminated EMG signals. It can further improve the quality of EMG signals, which is of great significance for improving the accuracy of force estimation and motion intention recognition tasks. Compared with other state-of-the-art methods, our method can also provide the guiding significance for other biological signals.

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The most critical aspect of panorama generation is maintaining local semantic consistency. Objects may be projected from different depths in the captured image. When warping the image to a unified canvas, pixels at the semantic boundaries of the different views are significantly misaligned. We propose two lightweight strategies to address this challenge efficiently. First, the original image is segmented as superpixels rather than regular grids to preserve the structure of each cell. We propose effective cost functions to generate the warp matrix for each superpixel. The warp matrix varies progressively for smooth projection, which contributes to a more faithful reconstruction of object structures. Second, to deal with artifacts introduced by stitching, we use a seam line method tailored to superpixels. The algorithm takes into account the feature similarity of neighborhood superpixels, including color difference, structure and entropy. We also consider the semantic information to avoid semantic misalignment. The optimal solution constrained by the cost functions is obtained under a graph model. The resulting stitched images exhibit improved naturalness. Extensive testing on common panorama stitching datasets is performed on the algorithm. Experimental results show that the proposed algorithm effectively mitigates artifacts, preserves the completeness of semantics and produces panoramic images with a subjective quality that is superior to that of alternative methods.

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BACKGROUND: Neuroprostheses are used to electrically stimulate the brain, modulate neural activity and restore sensory and motor function following injury or disease, such as blindness, paralysis, and other movement and psychiatric disorders. Recordings are often made simultaneously with stimulation, allowing the monitoring of neural signals and closed-loop control of devices. However, stimulation-evoked artifacts may obscure neural activity, particularly when stimulation and recording sites are nearby. Several methods have been developed to remove stimulation artifacts, but it remains challenging to validate and compare these methods because the 'ground-truth' of the neuronal signals may be contaminated by artifacts. NEW METHOD: Here, we delivered stimulation to the visual cortex via a high-channel-count prosthesis while recording neuronal activity and stimulation artifacts. We quantified the waveforms and temporal properties of stimulation artifacts from the cortical visual prosthesis (CVP) and used them to build a dataset, in which we simulated the neuronal activity and the stimulation artifacts. We illustrate how to use the simulated data to evaluate the performance of six software-based artifact removal methods (Template subtraction, Linear interpolation, Polynomial fitting, Exponential fitting, SALPA and ERAASR) in a CVP application scenario. RESULTS: We here focused on stimulation artifacts caused by electrical stimulation through a high-channel-count cortical prosthesis device. We find that the Polynomial fitting and Exponential fitting methods outperform the other methods in recovering spikes and multi-unit activity. Linear interpolation and Template subtraction recovered the local-field potentials. CONCLUSION: Polynomial fitting and Exponential fitting provided a good trade-off between the quality of the recovery of spikes and multi-unit activity (MUA) and the computational complexity for a cortical prosthesis.

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BACKGROUND AND PURPOSE: Higher magnetic field strength introduces stronger magnetic field inhomogeneities in the brain, especially within temporal lobes, leading to image artifacts. Particularly, T2-weighted fluid-attenuated inversion recovery (FLAIR) images can be affected by these artifacts. Here, we aimed to improve the FLAIR image quality in temporal lobe regions through image processing of multiple contrast images via machine learning using a neural network. METHODS: Thirteen drug-resistant MR-negative epilepsy patients (age 29.2 ± 9.4y, 5 females) were scanned on a 7 T MRI scanner. Magnetization-prepared (MP2RAGE) and saturation-prepared with 2 rapid gradient echoes, multi-echo gradient echo with four echo times, and the FLAIR sequence were acquired. A voxel-wise neural network was trained on extratemporal-lobe voxels from the acquired structural scans to generate a new FLAIR-like image (i.e., deepFLAIR) with reduced temporal lobe inhomogeneities. The deepFLAIR was evaluated in temporal lobes through signal-to-noise (SNR), contrast-to-noise (CNR) ratio, the sharpness of the gray-white matter boundary and joint-histogram analysis. Saliency mapping demonstrated the importance of each input image per voxel. RESULTS: SNR and CNR in both gray and white matter were significantly increased (p < 0.05) in the deepFLAIR's temporal ROIs, compared to the FLAIR. The gray-white matter boundary sharpness was either preserved or improved in 10/13 right-sided temporal regions and was found significantly increased in the ROIs. Multiple image contrasts were influential for the deepFLAIR reconstruction with the MP2RAGE second inversion image being the most important. CONCLUSIONS: The deepFLAIR network showed promise to restore the FLAIR signal and reduce contrast attenuation in temporal lobe areas. This may yield a valuable tool, especially when artifact-free FLAIR images are not available.

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Recently, advancements in image sensor technology have paved the way for the proliferation of high-dynamic-range television (HDRTV). Consequently, there has been a surge in demand for the conversion of standard-dynamic-range television (SDRTV) to HDRTV, especially due to the dearth of native HDRTV content. However, since SDRTV often comes with video encoding artifacts, SDRTV to HDRTV conversion often amplifies these encoding artifacts, thereby reducing the visual quality of the output video. To solve this problem, this paper proposes a multi-frame content-aware mapping network (MCMN), aiming to improve the performance of conversion from low-quality SDRTV to high-quality HDRTV. Specifically, we utilize the temporal spatial characteristics of videos to design a content-aware temporal spatial alignment module for the initial alignment of video features. In the feature prior extraction stage, we innovatively propose a hybrid prior extraction module, including cross-temporal priors, local spatial priors, and global spatial prior extraction. Finally, we design a temporal spatial transformation module to generate an improved tone mapping result. From time to space, from local to global, our method makes full use of multi-frame information to perform inverse tone mapping of single-frame images, while it is also able to better repair coding artifacts.

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OBJECTIVE: Analysis of the electroencephalogram (EEG) for epileptic spike and seizure detection or brain-computer interfaces can be severely hampered by the presence of artifacts. The aim of this study is to describe and evaluate a fast automatic algorithm for ongoing correction of artifacts in continuous EEG recordings, which can be applied offline and online. METHODS: The automatic algorithm for ongoing correction of artifacts is based on fast blind source separation. It uses a sliding window technique with overlapping epochs and features in the spatial, temporal and frequency domain to detect and correct ocular, cardiac, muscle and powerline artifacts. RESULTS: The approach was validated in an independent evaluation study on publicly available continuous EEG data with 2035 marked artifacts. Validation confirmed that 88% of the artifacts could be removed successfully (ocular: 81%, cardiac: 84%, muscle: 98%, powerline: 100%). It outperformed state-of-the-art algorithms both in terms of artifact reduction rates and computation time. CONCLUSIONS: Fast ongoing artifact correction successfully removed a good proportion of artifacts, while preserving most of the EEG signals. SIGNIFICANCE: The presented algorithm may be useful for ongoing correction of artifacts, e.g., in online systems for epileptic spike and seizure detection or brain-computer interfaces.

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BACKGROUND: Deep brain stimulation (DBS) is an effective treatment for movement disorders such as Parkinson's disease (PD). However, local field potentials (LFPs) recorded through lead externalization during high-frequency stimulation (HFS) are contaminated by stimulus artifacts, which require to be removed before further analysis. NEW METHOD: In this study, a novel stimulus artifact removal algorithm based on manifold denoising, termed Shrinkage and Manifold-based Artifact Removal using Template Adaptation (SMARTA), was proposed to remove artifacts by deriving a template for each stimulus artifact and subtracting it from the signal. Under a low-dimensional manifold assumption, a matrix denoising technique called optimal shrinkage was applied to design a similarity metric such that the template for stimulus artifacts could be accurately recovered. RESULT: SMARTA was evaluated using semirealistic signals, which were the combination of semirealistic stimulus artifacts recorded in an agar brain model and LFPs of PD patients with no stimulation, and realistic LFP signals recorded in patients with PD during HFS. The results indicated that SMARTA removes stimulus artifacts with a modest distortion in LFP estimates. COMPARISON WITH EXISTING METHODS: SMARTA was compared with moving-average subtraction, sample-and-interpolate technique, and Hampel filtering. CONCLUSION: The proposed SMARTA algorithm helps the exploration of the neurophysiological mechanisms of DBS effects.

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In this study, we introduce Blob-B-Gone, a lightweight framework to computationally differentiate and eventually remove dense isotropic localization accumulations (blobs) caused by artifactually immobilized particles in MINFLUX single-particle tracking (SPT) measurements. This approach uses purely geometrical features extracted from MINFLUX-detected single-particle trajectories, which are treated as point clouds of localizations. Employing k-means++ clustering, we perform single-shot separation of the feature space to rapidly extract blobs from the dataset without the need for training. We automatically annotate the resulting sub-sets and, finally, evaluate our results by means of principal component analysis (PCA), highlighting a clear separation in the feature space. We demonstrate our approach using two- and three-dimensional simulations of freely diffusing particles and blob artifacts based on parameters extracted from hand-labeled MINFLUX tracking data of fixed 23-nm bead samples and two-dimensional diffusing quantum dots on model lipid membranes. Applying Blob-B-Gone, we achieve a clear distinction between blob-like and other trajectories, represented in F1 scores of 0.998 (2D) and 1.0 (3D) as well as 0.995 (balanced) and 0.994 (imbalanced). This framework can be straightforwardly applied to similar situations, where discerning between blob and elongated time traces is desirable. Given a number of localizations sufficient to express geometric features, the method can operate on any generic point clouds presented to it, regardless of its origin.

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Optical Coherence Tomography Angiography (OCTA) has revolutionized non-invasive, high-resolution imaging of blood vessels. However, the challenge of tail artifacts in OCTA images persists. In response, we present the Tail Artifact Removal via Transmittance Effect Subtraction (TAR-TES) algorithm that effectively mitigates these artifacts. Through a simple physics-based model, the TAR-TES accounts for variations in transmittance within the shallow layers with the vasculature, resulting in the removal of tail artifacts in deeper layers after the vessel. Comparative evaluations with alternative correction methods demonstrate that TAR-TES excels in eliminating these artifacts while preserving the essential integrity of vasculature images. Crucially, the success of the TAR-TES is closely linked to the precise adjustment of a weight constant, underlining the significance of individual dataset parameter optimization. In conclusion, TAR-TES emerges as a powerful tool for enhancing OCTA image quality and reliability in both clinical and research settings, promising to reshape the way we visualize and analyze intricate vascular networks within biological tissues. Further validation across diverse datasets is essential to unlock the full potential of this physics-based solution.

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Objective.Single-pulse electrical stimulation (SPES) has been widely used to probe effective connectivity. However, analysis of the neural response is often confounded by stimulation artifacts. We developed a novel matching pursuit-based artifact reconstruction and removal method (MPARRM) capable of removing artifacts from stimulation-artifact-affected electrophysiological signals.Approach.To validate MPARRM across a wide range of potential stimulation artifact types, we performed a bench-top experiment in which we suspended electrodes in a saline solution to generate 110 types of real-world stimulation artifacts. We then added the generated stimulation artifacts to ground truth signals (stereoelectroencephalography signals from nine human subjects recorded during a receptive speech task), applied MPARRM to the combined signal, and compared the resultant denoised signal with the ground truth signal. We further applied MPARRM to artifact-affected neural signals recorded from the hippocampus while performing SPES on the ipsilateral basolateral amygdala in nine human subjects.Main results.MPARRM could remove stimulation artifacts without introducing spectral leakage or temporal spread. It accommodated variable stimulation parameters and recovered the early response to SPES within a wide range of frequency bands. Specifically, in the early response period (5-10 ms following stimulation onset), we found that the broadband gamma power (70-170 Hz) of the denoised signal was highly correlated with the ground truth signal (R=0.98±0.02, Pearson), and the broadband gamma activity of the denoised signal faithfully revealed the responses to the auditory stimuli within the ground truth signal with94%±1.47%sensitivity and99%±1.01%specificity. We further found that MPARRM could reveal the expected temporal progression of broadband gamma activity along the anterior-posterior axis of the hippocampus in response to the ipsilateral amygdala stimulation.Significance.MPARRM could faithfully remove SPES artifacts without confounding the electrophysiological signal components, especially during the early-response period. This method can facilitate the understanding of the neural response mechanisms of SPES.

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Brain-computer interfaces (BCIs) have emerged as a promising technology for enhancing communication between the human brain and external devices. Electroencephalography (EEG) is particularly promising in this regard because it has high temporal resolution and can be easily worn on the head in everyday life. However, motion artifacts caused by muscle activity, fasciculation, cable swings, or magnetic induction pose significant challenges in real-world BCI applications. In this paper, we present a systematic review of methods for motion artifact reduction in online BCI experiments. Using the PRISMA filter method, we conducted a comprehensive literature search on PubMed, focusing on open access publications from 1966 to 2022. We evaluated 2,333 publications based on predefined filtering rules to identify existing methods and pipelines for motion artifact reduction in EEG data. We present a lookup table of all papers that passed the defined filters, all used methods, and pipelines and compare their overall performance and suitability for online BCI experiments. We summarize suitable methods, algorithms, and concepts for motion artifact reduction in online BCI applications, highlight potential research gaps, and discuss existing community consensus. This review aims to provide a comprehensive overview of the current state of the field and guide researchers in selecting appropriate methods for motion artifact reduction in online BCI experiments.

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The goal of this study was to test a novel approach (iCanClean) to remove non-brain sources from scalp EEG data recorded in mobile conditions. We created an electrically conductive phantom head with 10 brain sources, 10 contaminating sources, scalp, and hair. We tested the ability of iCanClean to remove artifacts while preserving brain activity under six conditions: Brain, Brain + Eyes, Brain + Neck Muscles, Brain + Facial Muscles, Brain + Walking Motion, and Brain + All Artifacts. We compared iCanClean to three other methods: Artifact Subspace Reconstruction (ASR), Auto-CCA, and Adaptive Filtering. Before and after cleaning, we calculated a Data Quality Score (0-100%), based on the average correlation between brain sources and EEG channels. iCanClean consistently outperformed the other three methods, regardless of the type or number of artifacts present. The most striking result was for the condition with all artifacts simultaneously present. Starting from a Data Quality Score of 15.7% (before cleaning), the Brain + All Artifacts condition improved to 55.9% after iCanClean. Meanwhile, it only improved to 27.6%, 27.2%, and 32.9% after ASR, Auto-CCA, and Adaptive Filtering. For context, the Brain condition scored 57.2% without cleaning (reasonable target). We conclude that iCanClean offers the ability to clear multiple artifact sources in real time and could facilitate human mobile brain-imaging studies with EEG.

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An efficient processing approach is essential for increasing identification accuracy since the electroencephalogram (EEG) signals produced by the Brain-Computer Interface (BCI) apparatus are nonlinear, nonstationary, and time-varying. The interpretation of scalp EEG recordings can be hampered by nonbrain contributions to electroencephalographic (EEG) signals, referred to as artifacts. Common disturbances in the capture of EEG signals include electrooculogram (EOG), electrocardiogram (ECG), electromyogram (EMG) and other artifacts, which have a significant impact on the extraction of meaningful information. This study suggests integrating the Singular Spectrum Analysis (SSA) and Independent Component Analysis (ICA) methods to preprocess the EEG data. The key objective of our research was to employ Higher-Order Linear-Moment-based SSA (HOL-SSA) to decompose EEG signals into multivariate components, followed by extracting source signals using Online Recursive ICA (ORICA). This approach effectively improves artifact rejection. Experimental results using the motor imagery High-Gamma Dataset validate our method's ability to identify and remove artifacts such as EOG, ECG, and EMG from EEG data, while preserving essential brain activity.

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The National Cancer Institute (NCI) supports many research programs and consortia, many of which use imaging as a major modality for characterizing cancerous tissue. A trans-consortia Image Analysis Working Group (IAWG) was established in 2019 with a mission to disseminate imaging-related work and foster collaborations. In 2022, the IAWG held a virtual hackathon focused on addressing challenges of analyzing high dimensional datasets from fixed cancerous tissues. Standard image processing techniques have automated feature extraction, but the next generation of imaging data requires more advanced methods to fully utilize the available information. In this perspective, we discuss current limitations of the automated analysis of multiplexed tissue images, the first steps toward deeper understanding of these limitations, what possible solutions have been developed, any new or refined approaches that were developed during the Image Analysis Hackathon 2022, and where further effort is required. The outstanding problems addressed in the hackathon fell into three main themes: 1) challenges to cell type classification and assessment, 2) translation and visual representation of spatial aspects of high dimensional data, and 3) scaling digital image analyses to large (multi-TB) datasets. We describe the rationale for each specific challenge and the progress made toward addressing it during the hackathon. We also suggest areas that would benefit from more focus and offer insight into broader challenges that the community will need to address as new technologies are developed and integrated into the broad range of image-based modalities and analytical resources already in use within the cancer research community.

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Motion artifacts in magnetic resonance imaging (MRI) have always been a serious issue because they can affect subsequent diagnosis and treatment. Supervised deep learning methods have been investigated for the removal of motion artifacts; however, they require paired data that are difficult to obtain in clinical settings. Although unsupervised methods are widely proposed to fully use clinical unpaired data, they generally focus on anatomical structures generated by the spatial domain while ignoring phase error (deviations or inaccuracies in phase information that are possibly caused by rigid motion artifacts during image acquisition) provided by the frequency domain. In this study, a 2D unsupervised deep learning method named unsupervised disentangled dual-domain network (UDDN) was proposed to effectively disentangle and remove unwanted rigid motion artifacts from images. In UDDN, a dual-domain encoding module was presented to capture different types of information from the spatial and frequency domains to enrich the information. Moreover, a cross-domain attention fusion module was proposed to effectively fuse information from different domains, reduce information redundancy, and improve the performance of motion artifact removal. UDDN was validated on a publicly available dataset and a clinical dataset. Qualitative and quantitative experimental results showed that our method could effectively remove motion artifacts and reconstruct image details. Moreover, the performance of UDDN surpasses that of several state-of-the-art unsupervised methods and is comparable with that of the supervised method. Therefore, our method has great potential for clinical application in MRI, such as real-time removal of rigid motion artifacts.

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Background: Ultra-Wide-Field (UWF) fundus imaging is an essential diagnostic tool for identifying ophthalmologic diseases, as it captures detailed retinal structures within a wider field of view (FOV). However, the presence of eyelashes along the edge of the eyelids can cast shadows and obscure the view of fundus imaging, which hinders reliable interpretation and subsequent screening of fundus diseases. Despite its limitations, there are currently no effective methods or datasets available for removing eyelash artifacts from UWF fundus images. This research aims to develop an effective approach for eyelash artifact removal and thus improve the visual quality of UWF fundus images for accurate analysis and diagnosis. Methods: To address this issue, we first constructed two UWF fundus datasets: the paired synthetic eyelashes (PSE) dataset and the unpaired real eyelashes (uPRE) dataset. Then we proposed a deep learning architecture called Joint Conditional Generative Adversarial Networks (JcGAN) to remove eyelash artifacts from UWF fundus images. JcGAN employs a shared generator with two discriminators for joint learning of both real and synthetic eyelash artifacts. Furthermore, we designed a background refinement module that refines background information and is trained with the generator in an end-to-end manner. Results: Experimental results on both PSE and uPRE datasets demonstrate the superiority of the proposed JcGAN over several state-of-the-art deep learning approaches. Compared with the best existing method, JcGAN improves PSNR and SSIM by 4.82% and 0.23%, respectively. In addition, we also verified that eyelash artifact removal via JcGAN could significantly improve vessel segmentation performance in UWF fundus images. Assessment via vessel segmentation illustrates that the sensitivity, Dice coefficient and area under curve (AUC) of ResU-Net have respectively increased by 3.64%, 1.54%, and 1.43% after eyelash artifact removal using JcGAN. Conclusion: The proposed JcGAN effectively removes eyelash artifacts in UWF images, resulting in improved visibility of retinal vessels. Our method can facilitate better processing and analysis of retinal vessels and has the potential to improve diagnostic outcomes.

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When EEG recordings are used to reveal interactions between central-nervous and cardiovascular processes, the cardiac field artifact (CFA) poses a major challenge. Because the electric field generated by cardiac activity is also captured by scalp electrodes, the CFA arises as a heavy contaminant whenever EEG data are analyzed time-locked to cardio-electric events. A typical example is measuring stimulus-evoked potentials elicited at different phases of the cardiac cycle. Here, we present a nonlinear regression method deploying neural networks that allows to remove the CFA from the EEG signal in such scenarios. We train neural network models to predict R-peak centered EEG episodes based on the ECG and additional CFA-related information. In a second step, these trained models are used to predict and consequently remove the CFA in EEG episodes containing visual stimulation occurring time-locked to the ECG. We show that removing these predictions from the signal effectively removes the CFA without affecting the intertrial phase coherence of stimulus-evoked activity. In addition, we provide the results of an extensive grid search suggesting a set of appropriate model hyperparameters. The proposed method offers a replicable way of removing the CFA on the single-trial level, without affecting stimulus-related variance occurring time-locked to cardiac events. Disentangling the cardiac field artifact (CFA) from the EEG signal is a major challenge when investigating the neurocognitive impact of cardioafferent traffic by means of the EEG. When stimuli are presented time-locked to the cardiac cycle, both sources of variance are systematically confounded. Here, we propose a regression-based approach deploying neural network models to remove the CFA from the EEG. This approach effectively removes the CFA on a single-trial level and is purely data-driven, providing replicable results.

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BACKGROUND: With up to 256 channels, high-density electroencephalography (hd-EEG) has become essential to the sleep research field. The vast amount of data resulting from this magnitude of channels in overnight EEG recordings complicates the removal of artifacts. NEW METHOD: We present a new, semi-automatic artifact removal routine specifically designed for sleep hd-EEG recordings. By employing a graphical user interface (GUI), the user assesses epochs in regard to four sleep quality markers (SQMs). Based on their topography and underlying EEG signal, the user eventually removes artifactual values. To identify artifacts, the user is required to have basic knowledge of the typical (patho-)physiological EEG they are interested in, as well as artifactual EEG. The final output consists of a binary matrix (channels x epochs). Channels affected by artifacts can be restored in afflicted epochs using epoch-wise interpolation, a function included in the online repository. RESULTS: The routine was applied in 54 overnight sleep hd-EEG recordings. The proportion of bad epochs highly depends on the number of channels required to be artifact-free. Between 95% and 100% of bad epochs could be restored using epoch-wise interpolation. We furthermore present a detailed examination of two extreme cases (with few and many artifacts). For both nights, the topography and cyclic pattern of delta power look as expected after artifact removal. COMPARISON WITH EXISTING METHODS: Numerous artifact removal methods exist, yet their scope of application usually targets short wake EEG recordings. The proposed routine provides a transparent, practical, and efficient approach to identify artifacts in overnight sleep hd-EEG recordings. CONCLUSION: This method reliably identifies artifacts simultaneously in all channels and epochs.

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