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1.
Phys Rev E ; 105(2-2): 025001, 2022 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-35291078

RESUMEN

Muscles and tendons, actuators in robotics, and various sports implements are examples that exploit elasticity to accelerate objects. Tuning the mechanical properties of elastic elements connecting objects can greatly enhance the transfer of mechanical energy between the objects. Here, we study experimentally the throw of rigid projectiles by an actuator, which has a soft elastic element added to the distal end. We vary the thickness of the elastic layer and suggest a simple mass-spring chain model to find the properties of the elastic layer, which will maximize the energy transfer from the actuator to the projectile. The insertion of a soft layer, impedance matched to the ejection frequency of the projectile mass, can increase the throwing efficiency by over 400%. Finally, we identify that very thick and very soft compliant layers could potentially lead to high efficiency and flexibility simultaneously.

2.
Eur Phys J B ; 94(10): 209, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34690541

RESUMEN

ABSTRACT: Digital contact tracing has been suggested as an effective strategy for controlling an epidemic without severely limiting personal mobility. Here, we use smartphone proximity data to explore how social structure affects contact tracing of COVID-19. We model the spread of COVID-19 and find that the effectiveness of contact tracing depends strongly on social network structure and heterogeneous social activity. Contact tracing is shown to be remarkably effective in a workplace environment and the effectiveness depends strongly on the minimum duration of contact required to initiate quarantine. In a realistic social network, we find that forward contact tracing with immediate isolation can reduce an epidemic by more than 70%. In perspective, our findings highlight the necessity of incorporating social heterogeneity into models of mitigation strategies. SUPPLEMENTARY INFORMATION: The online version supplementary material available at 10.1140/epjb/s10051-021-00222-8.

3.
Sci Rep ; 11(1): 11191, 2021 05 27.
Artículo en Inglés | MEDLINE | ID: mdl-34045593

RESUMEN

Epidemics are regularly associated with reports of superspreading: single individuals infecting many others. How do we determine if such events are due to people inherently being biological superspreaders or simply due to random chance? We present an analytically solvable model for airborne diseases which reveal the spreading statistics of epidemics in socio-spatial heterogeneous spaces and provide a baseline to which data may be compared. In contrast to classical SIR models, we explicitly model social events where airborne pathogen transmission allows a single individual to infect many simultaneously, a key feature that generates distinctive output statistics. We find that diseases that have a short duration of high infectiousness can give extreme statistics such as 20% infecting more than 80%, depending on the socio-spatial heterogeneity. Quantifying this by a distribution over sizes of social gatherings, tracking data of social proximity for university students suggest that this can be a approximated by a power law. Finally, we study mitigation efforts applied to our model. We find that the effect of banning large gatherings works equally well for diseases with any duration of infectiousness, but depends strongly on socio-spatial heterogeneity.


Asunto(s)
Portador Sano , Transmisión de Enfermedad Infecciosa , Modelos Estadísticos , Conducta Social , Análisis Espacial , Humanos , Material Particulado
4.
Soft Matter ; 16(14): 3395-3406, 2020 Apr 08.
Artículo en Inglés | MEDLINE | ID: mdl-32159549

RESUMEN

Self-assembly of ordered nanometer-scale patterns is interesting in itself, but its practical value depends on the ability to predict and control pattern formation. In this paper we demonstrate theoretically and numerically that engineering of extrinsic as well as intrinsic substrate geometry may provide such a controllable ordering mechanism for block copolymers films. We develop an effective two-dimensional model of thin films of striped-phase diblock copolymers on general curved substrates. The model is obtained as an expansion in the film thickness and thus takes the third dimension into account, which crucially allows us to predict the preferred orientations even in the absence of intrinsic curvature. We determine the minimum-energy textures on several curved surfaces and arrive at a general principle for using substrate curvature as an ordering field, namely that the stripes will tend to align along directions of maximal curvature.

5.
iScience ; 23(2): 100830, 2020 Feb 21.
Artículo en Inglés | MEDLINE | ID: mdl-31986479

RESUMEN

How do flat sheets of cells form gut and neural tubes? Across systems, several mechanisms are at play: cells wedge, form actomyosin cables, or intercalate. As a result, the cell sheet bends, and the tube elongates. It is unclear to what extent each mechanism can drive tube formation on its own. To address this question, we computationally probe if one mechanism, either cell wedging or intercalation, may suffice for the entire sheet-to-tube transition. Using a physical model with epithelial cells represented by polarized point particles, we show that either cell intercalation or wedging alone can be sufficient and that each can both bend the sheet and extend the tube. When working in parallel, the two mechanisms increase the robustness of the tube formation. The successful simulations of the key features in Drosophila salivary gland budding, sea urchin gastrulation, and mammalian neurulation support the generality of our results.

6.
Phys Rev E ; 98(1-1): 013101, 2018 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-30110724

RESUMEN

The wetting properties of immiscible two-phase systems are crucial in applications ranging from laboratory-on-a-chip devices to field-scale oil recovery. It has long been known that effective wetting properties can be altered by the application of an electric field; a phenomenon coined as electrowetting. Here, we consider theoretically and numerically a single droplet sitting on an (insulated) conductor, i.e., within a capacitor. The droplet consists of a pure phase without solutes, while the surrounding fluid contains a symmetric monovalent electrolyte, and the interface between them is impermeable. Using nonlinear Poisson-Boltzmann theory, we present a theoretical prediction of the dependency of the apparent contact angle on the applied electric potential. We then present well-resolved dynamic simulations of electrowetting using a phase-field model, where the entire two-phase electrokinetic problem, including the electric double layers (EDLs), is resolved. The simulations show that, while the contact angle on scales smaller than the EDL is unaffected by the application of an electric field, an apparent contact angle forms on scales beyond the EDL. This contact angle relaxes in time towards a saturated apparent contact angle. The dependency of the contact angle upon applied electric potential is in good agreement with the theoretical prediction. The only phenomenological parameter in the prediction is shown to depend on the permeability ratio between the two phases. Based on the resulting unified description, we obtain an effective expression of the contact angle which can be used in more macroscopic numerical simulations, i.e. where the electrokinetic problem is not fully resolved.

7.
Phys Biol ; 15(6): 066004, 2018 07 25.
Artículo en Inglés | MEDLINE | ID: mdl-29939152

RESUMEN

Mechanical forces are important factors in the development, coordination and collective motion of cells. Based on a continuum-scale model, we consider the influence of substrate friction on cell motility in confluent living tissue. We test our model on the experimental data of endothelial and cancer cells. In contrast to the commonly used drag friction, we find that solid friction best captures the cell speed distribution. From our model, we quantify a number of measurable physical tissue parameters, such as the ratio between the viscosity and substrate friction.


Asunto(s)
Movimiento Celular , Células Endoteliales/fisiología , Fricción , Animales , Línea Celular , Línea Celular Tumoral , Células Endoteliales de la Vena Umbilical Humana , Humanos , Células MCF-7 , Modelos Moleculares , Viscosidad
8.
Phys Rev E ; 97(4-1): 043114, 2018 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-29758757

RESUMEN

In low-permeability rock, fluid and mineral transport occur in pores and fracture apertures at the scale of micrometers and below. At this scale, the presence of surface charge, and a resultant electrical double layer, may considerably alter transport properties. However, due to the inherent nonlinearity of the governing equations, numerical and theoretical studies of the coupling between electric double layers and flow have mostly been limited to two-dimensional or axisymmetric geometries. Here, we present comprehensive three-dimensional simulations of electrohydrodynamic flow in an idealized fracture geometry consisting of a sinusoidally undulated bottom surface and a flat top surface. We investigate the effects of varying the amplitude and the Debye length (relative to the fracture aperture) and quantify their impact on flow channeling. The results indicate that channeling can be significantly increased in the plane of flow. Local flow in the narrow regions can be slowed down by up to 5% compared to the same geometry without charge, for the highest amplitude considered. This indicates that electrohydrodynamics may have consequences for transport phenomena and surface growth in geophysical systems.

9.
Phys Rev E ; 97(1-1): 013307, 2018 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-29448363

RESUMEN

The lattice Boltzmann method has become one of the standard techniques for simulating a wide range of fluid flows. However, the intrinsic coupling of momentum and space discretization restricts the traditional lattice Boltzmann method to regular lattices. Alternative off-lattice Boltzmann schemes exist for both single- and multiphase flows that decouple the velocity discretization from the underlying spatial grid. The current study extends the applicability of these off-lattice methods by introducing a finite element formulation that enables simulating contact line dynamics for partially wetting fluids. This work exemplifies the implementation of the scheme and furthermore presents benchmark experiments that show the scheme reduces spurious currents at the liquid-vapor interface by at least two orders of magnitude compared to a nodal implementation and allows for predicting the equilibrium states accurately in the range of moderate contact angles.

10.
PLoS One ; 12(12): e0188973, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-29236739

RESUMEN

A day in the life of a person involves a broad range of activities which are common across many people. Going beyond diurnal cycles, a central question is: to what extent do individuals act according to patterns shared across an entire population? Here we investigate the interplay between different activity types, namely communication, motion, and physical proximity by analyzing data collected from smartphones distributed among 638 individuals. We explore two central questions: Which underlying principles govern the formation of the activity patterns? Are the patterns specific to each individual or shared across the entire population? We find that statistics of the entire population allows us to successfully predict 71% of the activity and 85% of the inactivity involved in communication, mobility, and physical proximity. Surprisingly, individual level statistics only result in marginally better predictions, indicating that a majority of activity patterns are shared across our sample population. Finally, we predict short-term activity patterns using a generalized linear model, which suggests that a simple linear description might be sufficient to explain a wide range of actions, whether they be of social or of physical character.


Asunto(s)
Ejercicio Físico , Relaciones Interpersonales , Movimiento , Humanos , Teléfono Inteligente
11.
Biophys J ; 113(3): 580-596, 2017 Aug 08.
Artículo en Inglés | MEDLINE | ID: mdl-28793213

RESUMEN

Many proteins and peptides self-associate into highly ordered and structurally similar amyloid cross-ß aggregates. This fibrillation is critically dependent on properties of the protein and the surrounding environment that alter kinetic and thermodynamic equilibria. Here, we report on dominating surface and solution effects on the fibrillogenic behavior and amyloid assembly of the C-36 peptide, a circulating bioactive peptide from the α1-antitrypsin serine protease inhibitor. C-36 converts from an unstructured peptide to mature amyloid twisted-ribbon fibrils over a few hours when incubated on polystyrene plates under physiological conditions through a pathway dominated by surface-enhanced nucleation. In contrast, in plates with nonbinding surfaces, slow bulk nucleation takes precedence over surface catalysis and leads to fibrillar polymorphism. Fibrillation is strongly ion-sensitive, underlining the interplay between hydrophilic and hydrophobic forces in molecular self-assembly. The addition of exogenous surfaces in the form of silica glass beads and polyanionic heparin molecules potently seeds the amyloid conversion process. In particular, heparin acts as an interacting template that rapidly forces ß-sheet aggregation of C-36 to distinct amyloid species within minutes and leads to a more homogeneous fibril population according to solid-state NMR analysis. Heparin's template effect highlights its role in amyloid seeding and homogeneous self-assembly, which applies both in vitro and in vivo, where glycosaminoglycans are strongly associated with amyloid deposits. Our study illustrates the versatile thermodynamic landscape of amyloid formation and highlights how different experimental conditions direct C-36 into distinct macromolecular structures.


Asunto(s)
Amiloide/química , Multimerización de Proteína , Serpinas/química , Secuencia de Aminoácidos , Animales , Catálisis , Bovinos , Heparina/farmacología , Interacciones Hidrofóbicas e Hidrofílicas , Cinética , Poliestirenos/química , Multimerización de Proteína/efectos de los fármacos , Estructura Secundaria de Proteína , Soluciones , Propiedades de Superficie
12.
Phys Rev E ; 95(3-1): 032409, 2017 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-28415313

RESUMEN

We consider a model ecosystem of sessile species competing for space. In particular, we consider the system introduced by Mathiesen et al. [J. Mathiesen, N. Mitarai, K. Sneppen, and A. Trusina, Phys. Rev. Lett. 107, 188101 (2011)PRLTAO0031-900710.1103/PhysRevLett.107.188101] where species compete according to a fixed interaction network with links determined by a Bernoulli process. In the limit of a small introduction rate of new species, the model exhibits a discontinuous transition from a high-diversity state to a low-diversity state as the interaction probability between species, γ, is increased from zero. Here we explore the effects of finite introduction rates and system size on the phase transition by utilizing efficient parallel computing. We find that the low state appears for γ>γ_{c}. As γ is increased further, the high state approaches the low state, suggesting the possibility that the two states merge at a high γ. We find that the fraction of time spent in the high state becomes longer with higher introduction rates, but the availability of the two states is rather insensitive to the value of the introduction rate. Furthermore, we establish a relation between the introduction rate and the system size, which preserves the probability for the system to remain in the high-diversity state.


Asunto(s)
Ecosistema , Modelos Biológicos , Simulación por Computador , Factores de Tiempo
13.
Sci Rep ; 7: 43800, 2017 03 06.
Artículo en Inglés | MEDLINE | ID: mdl-28262796

RESUMEN

Two of the classical hallmarks of cancer are uncontrolled cell division and tissue invasion, which turn the disease into a systemic, life-threatening condition. Although both processes are studied, a clear correlation between cell division and motility of cancer cells has not been described previously. Here, we experimentally characterize the dynamics of invasive and non-invasive breast cancer tissues using human and murine model systems. The intrinsic tissue velocities, as well as the divergence and vorticity around a dividing cell correlate strongly with the invasive potential of the tissue, thus showing a distinct correlation between tissue dynamics and aggressiveness. We formulate a model which treats the tissue as a visco-elastic continuum. This model provides a valid reproduction of the cancerous tissue dynamics, thus, biological signaling is not needed to explain the observed tissue dynamics. The model returns the characteristic force exerted by an invading cell and reveals a strong correlation between force and invasiveness of breast cancer cells, thus pinpointing the importance of mechanics for cancer invasion.


Asunto(s)
Algoritmos , Movimiento Celular , Modelos Biológicos , Imagen de Lapso de Tiempo/métodos , Animales , Neoplasias de la Mama/patología , Línea Celular Tumoral , Humanos , Cinética , Células MCF-7 , Neoplasias Mamarias Animales/patología , Ratones , Microscopía de Contraste de Fase , Invasividad Neoplásica
14.
PLoS One ; 11(6): e0157436, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27300084

RESUMEN

The weight of links in a network is often related to the similarity of the nodes. Here, we introduce a simple tunable measure for analysing the similarity of nodes across different link weights. In particular, we use the measure to analyze homophily in a group of 659 freshman students at a large university. Our analysis is based on data obtained using smartphones equipped with custom data collection software, complemented by questionnaire-based data. The network of social contacts is represented as a weighted multilayer network constructed from different channels of telecommunication as well as data on face-to-face contacts. We find that even strongly connected individuals are not more similar with respect to basic personality traits than randomly chosen pairs of individuals. In contrast, several socio-demographics variables have a significant degree of similarity. We further observe that similarity might be present in one layer of the multilayer network and simultaneously be absent in the other layers. For a variable such as gender, our measure reveals a transition from similarity between nodes connected with links of relatively low weight to dis-similarity for the nodes connected by the strongest links. We finally analyze the overlap between layers in the network for different levels of acquaintanceships.


Asunto(s)
Personalidad , Apoyo Social , Simulación por Computador , Femenino , Amigos , Humanos , Masculino , Teléfono Inteligente , Estudiantes , Encuestas y Cuestionarios , Envío de Mensajes de Texto
15.
PLoS One ; 11(4): e0154442, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27124493

RESUMEN

Human social interaction is often intermittent. Two acquainted persons can have extended periods without social interaction punctuated by periods of repeated interaction. In this case, the repeated interaction can be characterized by a seed initiative by either of the persons and a number of follow-up interactions. The tendency to initiate social interaction plays an important role in the formation of social networks and is in general not symmetric between persons. In this paper, we study the dynamics of initiative by analysing and modeling a detailed call and text message network sampled from a group of 700 individuals. We show that in an average relationship between two individuals, one part is almost twice as likely to initiate communication compared to the other part. The asymmetry has social consequences and ultimately might lead to the discontinuation of a relationship. We explain the observed asymmetry by a positive feedback mechanism where individuals already taking initiative are more likely to take initiative in the future. In general, people with many initiatives receive attention from a broader spectrum of friends than people with few initiatives. Lastly, we compare the likelihood of taking initiative with the basic personality traits of the five factor model.


Asunto(s)
Conducta Cooperativa , Relaciones Interpersonales , Modelos Psicológicos , Red Social , Femenino , Humanos , Funciones de Verosimilitud , Masculino , Conformidad Social , Envío de Mensajes de Texto
16.
Artículo en Inglés | MEDLINE | ID: mdl-26274188

RESUMEN

According to classical grain growth laws, grain growth is driven by the minimization of surface energy and will continue until a single grain prevails. These laws do not take into account the lattice anisotropy and the details of the microscopic rearrangement of mass between grains. Here we consider coarsening of body-centered-cubic polycrystalline materials in three dimensions using the phase field crystal model. We observe, as a function of the quenching depth, a crossover between a state where grain rotation halts and the growth stagnates and a state where grains coarsen rapidly by coalescence through rotation and alignment of the lattices of neighboring grains. We show that the grain rotation per volume change of a grain follows a power law with an exponent of -1.25. The scaling exponent is consistent with theoretical considerations based on the conservation of dislocations.

17.
PLoS One ; 10(5): e0123876, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25955783

RESUMEN

Data from the social-media site, Twitter, is used to study the fluctuations in tweet rates of brand names. The tweet rates are the result of a strongly correlated user behavior, which leads to bursty collective dynamics with a characteristic 1/f noise. Here we use the aggregated "user interest" in a brand name to model collective human dynamics by a stochastic differential equation with multiplicative noise. The model is supported by a detailed analysis of the tweet rate fluctuations and it reproduces both the exact bursty dynamics found in the data and the 1/f noise.


Asunto(s)
Medios de Comunicación Sociales , Procesos Estocásticos , Algoritmos , Humanos , Modelos Teóricos , Procesamiento de Señales Asistido por Computador , Estadística como Asunto
18.
Nat Commun ; 5: 5720, 2014 Dec 08.
Artículo en Inglés | MEDLINE | ID: mdl-25483750

RESUMEN

In healthy blood vessels with a laminar blood flow, the endothelial cell division rate is low, only sufficient to replace apoptotic cells. The division rate significantly increases during embryonic development and under halted or turbulent flow. Cells in barrier tissue are connected and their motility is highly correlated. Here we investigate the long-range dynamics induced by cell division in an endothelial monolayer under non-flow conditions, mimicking the conditions during vessel formation or around blood clots. Cell divisions induce long-range, well-ordered vortex patterns extending several cell diameters away from the division site, in spite of the system's low Reynolds number. Our experimental results are reproduced by a hydrodynamic continuum model simulating division as a local pressure increase corresponding to a local tension decrease. Such long-range physical communication may be crucial for embryonic development and for healing tissue, for instance around blood clots.


Asunto(s)
División Celular , Células Endoteliales/citología , Biofisica , Velocidad del Flujo Sanguíneo , Citoplasma/metabolismo , Análisis de Fourier , Hemodinámica , Células Endoteliales de la Vena Umbilical Humana , Humanos , Hidrodinámica , Microscopía de Contraste de Fase , Modelos Cardiovasculares , Modelos Teóricos , Estrés Mecánico
19.
PLoS One ; 9(8): e104054, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25122138

RESUMEN

In this study we estimate the subcutaneous tissue counter pressure during drug infusion from a series of injections of insulin in type 2 diabetic patients using a non-invasive method. We construct a model for the pressure evolution in subcutaneous tissue based on mass continuity and the flow laws of a porous medium. For equivalent injection forces we measure the change in the infusion rate between injections in air at atmospheric pressure and in tissue. From a best fit with our model, we then determine the flow permeability as well as the bulk modulus of the tissue, estimated to be of the order 10-11-10-10 m2 and 105 Pa, respectively. The permeability is in good agreement with reported values for adipose porcine tissue. We suggest our model as a general way to estimate the pressure build-up in tissue during subcutaneous injection.


Asunto(s)
Inyecciones Subcutáneas/efectos adversos , Tejido Adiposo/fisiopatología , Animales , Diabetes Mellitus Tipo 2/tratamiento farmacológico , Diabetes Mellitus Tipo 2/fisiopatología , Humanos , Hipoglucemiantes/administración & dosificación , Insulina/administración & dosificación , Masculino , Permeabilidad , Presión , Grasa Subcutánea/fisiopatología , Tejido Subcutáneo/fisiopatología , Porcinos
20.
Phys Rev Lett ; 113(26): 265503, 2014 Dec 31.
Artículo en Inglés | MEDLINE | ID: mdl-25615353

RESUMEN

Plastic deformation mediated by collective dislocation dynamics is investigated in the two-dimensional phase-field crystal model of sheared single crystals. We find that intermittent fluctuations in the dislocation population number accompany bursts in the plastic strain-rate fluctuations. Dislocation number fluctuations exhibit a power-law spectral density 1/f2 at high frequencies f. The probability distribution of number fluctuations becomes bimodal at low driving rates corresponding to a scenario where low density of defects alternates at irregular times with high populations of defects. We propose a simple stochastic model of dislocation reaction kinetics that is able to capture these statistical properties of the dislocation density fluctuations as a function of shear rate.

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