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1.
Ann Hepatol ; 29(6): 101531, 2024 Jul 19.
Artículo en Inglés | MEDLINE | ID: mdl-39033930

RESUMEN

INTRODUCTION AND OBJECTIVES: Although the Psychometric Hepatic Encephalopathy Score (PHES) remains the gold standard in diagnosing minimal hepatic encephalopathy (MHE), its complexity limits its application in clinical practice. While more convenient tests, such as the Stroop test, Quickstroop, and the 1-min animal naming test (ANT-1), have emerged, they haven't been validated in our setting. Our objective was to validate these tests in our population. PATIENTS AND METHODS: This multicenter, observational, descriptive, and cross-sectional study was conducted in three hospitals in northeastern Mexico. MHE was defined as a PHES <-4. We included patients with cirrhosis aged >15 years without a history of overt hepatic encephalopathy. Data regarding sex, age, education, Child-Pugh/MELD-Na scores, etiology of cirrhosis, diabetes, hypertension, obesity, ascites, and clinically significant portal hypertension was collected. Fisher's exact test, Mann-Whitney U test, and receiver operating characteristic (ROC) curves were used for statistical analysis. RESULTS: Of the 121 patients included, 35.5 % were diagnosed with MHE. The presence of MHE was significantly associated with education level, years of study, and scores in the Stroop test, Quickstroop, and ANT-1. The AUROC curves were 77.9 %, 74.6 %, and 72.7 % for the Stroop test, Quickstroop, and ANT-1, respectively. The resulting cut-off points were 218.398 (sensitivity: 74 %; specificity: 74 %), 40.535 (sensitivity: 77 %; specificity: 68 %), and <16 animals (sensitivity: 58 %; specificity: 79 %), respectively. CONCLUSIONS: These tests are valid diagnostic tools for detecting MHE in our population. Their simpler use and applicability could increase the early diagnosis of MHE and prompt primary prophylaxis initiation for overt hepatic encephalopathy.

2.
Biomolecules ; 14(7)2024 Jun 29.
Artículo en Inglés | MEDLINE | ID: mdl-39062491

RESUMEN

The sterol regulatory element-binding protein (SREBP) pathway is an integral cellular mechanism that regulates lipid homeostasis, in which transcriptional activator SREBPs regulate the expression of various genes. In the carotenogenic yeast Xanthophyllomyces dendrorhous, Sre1 (the yeast SREBP homolog) regulates lipid biosynthesis and carotenogenesis, among other processes. Despite the characterization of several components of the SREBP pathway across various eukaryotes, the specific elements of this pathway in X. dendrorhous remain largely unknown. This study aimed to explore the potential regulatory mechanisms of the SREBP pathway in X. dendrorhous using the strain CBS.cyp61- as a model, which is known to have Sre1 in its active state under standard culture conditions, resulting in a carotenoid-overproducing phenotype. This strain was subjected to random mutagenesis with N-methyl-N'-nitro-N-nitrosoguanidine (NTG), followed by a screening methodology that focused on identifying mutants with altered Sre1 activation phenotypes. Single-nucleotide polymorphism (SNP) analysis of 20 selected mutants detected 5439 single-nucleotide variants (SNVs), narrowing them down to 1327 SNPs of interest after a series of filters. Classification based on SNP impact identified 116 candidate genes, including 49 genes with high impact and 68 genes with deleterious moderate-impact mutations. BLAST, InterProScan, and gene ontology enrichment analyses highlighted 25 genes as potential participants in regulating Sre1 in X. dendrorhous. The key findings of this study include the identification of genes potentially encoding proteins involved in protein import/export to the nucleus, sterol biosynthesis, the ubiquitin-proteasome system, protein regulatory activities such as deacetylases, a subset of kinases and proteases, as well as transcription factors that could be influential in SREBP regulation. These findings are expected to significantly contribute to the current understanding of the intricate regulation of the transcription factor Sre1 in X. dendrorhous, providing valuable groundwork for future research and potential biotechnological applications.


Asunto(s)
Basidiomycota , Proteínas de Unión a los Elementos Reguladores de Esteroles , Basidiomycota/genética , Basidiomycota/metabolismo , Proteínas de Unión a los Elementos Reguladores de Esteroles/metabolismo , Proteínas de Unión a los Elementos Reguladores de Esteroles/genética , Polimorfismo de Nucleótido Simple , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Regulación Fúngica de la Expresión Génica , Carotenoides/metabolismo , Mutación
3.
Chem Commun (Camb) ; 59(70): 10492-10495, 2023 Aug 29.
Artículo en Inglés | MEDLINE | ID: mdl-37566436

RESUMEN

The photophysics of natural deep eutectic solvents (NADESs) remains unexplored. Here, we report that a class of NADESs aggregates in water, enabling through-space interaction as evidenced by an unusual emission and redshifted UV absorption band. The NADESs enhanced fluorescence excitation and emission of fluorogenic proteins for improved bioimaging.

4.
Genetics ; 212(3): 691-710, 2019 07.
Artículo en Inglés | MEDLINE | ID: mdl-31068340

RESUMEN

Neurospora crassa is an established reference organism to investigate carotene biosynthesis and light regulation. However, there is little evidence of its capacity to produce secondary metabolites. Here, we report the role of the fungal-specific regulatory velvet complexes in development and secondary metabolism (SM) in N. crassa Three velvet proteins VE-1, VE-2, VOS-1, and a putative methyltransferase LAE-1 show light-independent nucleocytoplasmic localization. Two distinct velvet complexes, a heterotrimeric VE-1/VE-2/LAE-1 and a heterodimeric VE-2/VOS-1 are found in vivo The heterotrimer-complex, which positively regulates sexual development and represses asexual sporulation, suppresses siderophore coprogen production under iron starvation conditions. The VE-1/VE-2 heterodimer controls carotene production. VE-1 regulates the expression of >15% of the whole genome, comprising mainly regulatory and developmental features. We also studied intergenera functions of the velvet complex through complementation of Aspergillus nidulans veA, velB, laeA, vosA mutants with their N. crassa orthologs ve-1, ve-2, lae-1, and vos-1, respectively. Expression of VE-1 and VE-2 in A. nidulans successfully substitutes the developmental and SM functions of VeA and VelB by forming two functional chimeric velvet complexes in vivo, VelB/VE-1/LaeA and VE-2/VeA/LaeA, respectively. Reciprocally, expression of veA restores the phenotypes of the N. crassa ve-1 mutant. All N. crassa velvet proteins heterologously expressed in A. nidulans are localized to the nuclear fraction independent of light. These data highlight the conservation of the complex formation in N. crassa and A. nidulans However, they also underline the intergenera similarities and differences of velvet roles according to different life styles, niches and ontogenetic processes.


Asunto(s)
Carotenoides/metabolismo , Proteínas Fúngicas/metabolismo , Regulación Fúngica de la Expresión Génica , Neurospora crassa/genética , Esporas Fúngicas/genética , Transporte Activo de Núcleo Celular , Núcleo Celular/metabolismo , Proteínas Fúngicas/genética , Luz , Metiltransferasas/genética , Metiltransferasas/metabolismo , Neurospora crassa/metabolismo , Neurospora crassa/fisiología , Neurospora crassa/efectos de la radiación , Multimerización de Proteína , Esporas Fúngicas/fisiología , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
5.
Water Res ; 134: 92-100, 2018 05 01.
Artículo en Inglés | MEDLINE | ID: mdl-29407655

RESUMEN

Wastewater treatment plants have widely been described as a significant source of odour nuisance, which has led to an increase of neighbourhood complaints. Therefore, to mitigate the negative impact of odours, the detection and analysis of these emissions are required. This paper presents a measurement system based on an electronic nose for quantitative and qualitative odour analysis of samples collected from six different stages on a wastewater plant. Hence, two features vectors were performed in order to represent quantitative trends of the gaseous mixture sampled on the facility. In addition, odour fingerprints and a PCA were computed to discriminate odours from its sources and to detect relationships among the samples. This approach also comprises a dynamic dilution olfactometer. A PLS regression model was performed to predict the odour concentration by the electronic nose in term of odour units per cubic meter. The results show that the developed electronic nose is a promising and feasible instrument to characterize odours from wastewater plants.


Asunto(s)
Contaminantes Atmosféricos/análisis , Nariz Electrónica , Odorantes/análisis , Eliminación de Residuos Líquidos , Aguas Residuales , Análisis de los Mínimos Cuadrados , Análisis de Regresión
6.
Sci Rep ; 7: 44790, 2017 03 21.
Artículo en Inglés | MEDLINE | ID: mdl-28322269

RESUMEN

Light is an environmental signal perceived by most eukaryotic organisms and that can have major impacts on their growth and development. The MadC protein in the fungus Phycomyces blakesleeanus (Mucoromycotina) has been postulated to form part of the photosensory input for phototropism of the fruiting body sporangiophores, but the madC gene has remained unidentified since the 1960s when madC mutants were first isolated. In this study the madC gene was identified by positional cloning. All madC mutant strains contain loss-of-function point mutations within a gene predicted to encode a GTPase activating protein (GAP) for Ras. The madC gene complements the Saccharomyces cerevisiae Ras-GAP ira1 mutant and the encoded MadC protein interacts with P. blakesleeanus Ras homologs in yeast two-hybrid assays, indicating that MadC is a regulator of Ras signaling. Deletion of the homolog in the filamentous ascomycete Neurospora crassa affects the circadian clock output, yielding a pattern of asexual conidiation similar to a ras-1 mutant that is used in circadian studies in N. crassa. Thus, MadC is unlikely to be a photosensor, yet is a fundamental link in the photoresponses from blue light perceived by the conserved White Collar complex with Ras signaling in two distantly-related filamentous fungal species.


Asunto(s)
Ritmo Circadiano/fisiología , Fotobiología , Fototropismo/fisiología , Phycomyces/metabolismo , Phycomyces/fisiología , Proteínas ras/metabolismo , Alelos , Secuencia de Bases , Mapeo Cromosómico , Ritmo Circadiano/efectos de la radiación , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Perfilación de la Expresión Génica , Regulación Fúngica de la Expresión Génica/efectos de la radiación , Genes Fúngicos , Prueba de Complementación Genética , Luz , Mutación con Pérdida de Función/genética , Fenotipo , Fototropismo/efectos de la radiación , Phycomyces/genética , Phycomyces/efectos de la radiación , Homología de Secuencia de Ácido Nucleico , Transducción de Señal/efectos de la radiación , Transcripción Genética/efectos de la radiación
7.
Curr Biol ; 26(12): 1577-1584, 2016 06 20.
Artículo en Inglés | MEDLINE | ID: mdl-27238284

RESUMEN

Plants and fungi use light and other signals to regulate development, growth, and metabolism. The fruiting bodies of the fungus Phycomyces blakesleeanus are single cells that react to environmental cues, including light, but the mechanisms are largely unknown [1]. The related fungus Mucor circinelloides is an opportunistic human pathogen that changes its mode of growth upon receipt of signals from the environment to facilitate pathogenesis [2]. Understanding how these organisms respond to environmental cues should provide insights into the mechanisms of sensory perception and signal transduction by a single eukaryotic cell, and their role in pathogenesis. We sequenced the genomes of P. blakesleeanus and M. circinelloides and show that they have been shaped by an extensive genome duplication or, most likely, a whole-genome duplication (WGD), which is rarely observed in fungi [3-6]. We show that the genome duplication has expanded gene families, including those involved in signal transduction, and that duplicated genes have specialized, as evidenced by differences in their regulation by light. The transcriptional response to light varies with the developmental stage and is still observed in a photoreceptor mutant of P. blakesleeanus. A phototropic mutant of P. blakesleeanus with a heterozygous mutation in the photoreceptor gene madA demonstrates that photosensor dosage is important for the magnitude of signal transduction. We conclude that the genome duplication provided the means to improve signal transduction for enhanced perception of environmental signals. Our results will help to understand the role of genome dynamics in the evolution of sensory perception in eukaryotes.


Asunto(s)
Evolución Molecular , Duplicación de Gen , Genoma Fúngico , Mucor/genética , Phycomyces/genética , Transducción de Señal/genética , Luz , Mucor/efectos de la radiación , Familia de Multigenes , Percepción , Phycomyces/efectos de la radiación , Transcripción Genética/efectos de la radiación
8.
Proc Natl Acad Sci U S A ; 112(49): 15130-5, 2015 Dec 08.
Artículo en Inglés | MEDLINE | ID: mdl-26578805

RESUMEN

DASH (Drosophila, Arabidopsis, Synechocystis, Human)-type cryptochromes (cry-DASH) belong to a family of flavoproteins acting as repair enzymes for UV-B-induced DNA lesions (photolyases) or as UV-A/blue light photoreceptors (cryptochromes). They are present in plants, bacteria, various vertebrates, and fungi and were originally considered as sensory photoreceptors because of their incapability to repair cyclobutane pyrimidine dimer (CPD) lesions in duplex DNA. However, cry-DASH can repair CPDs in single-stranded DNA, but their role in DNA repair in vivo remains to be clarified. The genome of the fungus Phycomyces blakesleeanus contains a single gene for a protein of the cryptochrome/photolyase family (CPF) encoding a cry-DASH, cryA, despite its ability to photoreactivate. Here, we show that cryA expression is induced by blue light in a Mad complex-dependent manner. Moreover, we demonstrate that CryA is capable of binding flavin (FAD) and methenyltetrahydrofolate (MTHF), fully complements the Escherichia coli photolyase mutant and repairs in vitro CPD lesions in single-stranded and double-stranded DNA with the same efficiency. These results support a role for Phycomyces cry-DASH as a photolyase and suggest a similar role for cry-DASH in mucoromycotina fungi.


Asunto(s)
Criptocromos/fisiología , Reparación del ADN/fisiología , Evolución Molecular , Phycomyces/metabolismo , Criptocromos/genética , Genes Fúngicos , Phycomyces/genética , Dímeros de Pirimidina
9.
Rev. Fac. Med. (Bogotá) ; 63(3): 407-417, jul.-sep. 2015.
Artículo en Español | LILACS | ID: lil-757297

RESUMEN

Antecedentes. La violencia es un reconocido problema de salud pública que penetra en las diferentes esferas de la sociedad, incluyendo el mundo del trabajo en el sector de atención a la salud, lo que requiere de políticas y acciones para su control. Objetivo. Identificar situaciones de violencia directa, estructural y cultural percibidas, en sus ámbitos laborales, por personas trabajadoras de los hospitales públicos y la Secretaría Distrital de Salud de Bogotá. Métodos. Estudio cualitativo, desde una perspectiva construccionista social, que se realizó a través de grupos focales y análisis narrativos de las correspondientes transcripciones. Resultados. La violencia estructural en el sector público de la salud se ha incrementado, desde la reforma al sistema de salud conllevando incremento en la violencia directa, al verse involucradas las personas trabajadoras de salud en la negación del derecho a la salud y en procesos de competencia e individualización de la atención; respecto a la violencia cultural, la discriminación aparece como el elemento más relevante, repercutiendo en relaciones interpersonales negativas y en violación de derechos. Conclusiones. Las reformas neoliberales al sistema de salud colombiano han generado una problemática crítica en torno a las prácticas de la salud organizadas desde el sector público y a las condiciones de contratación del personal que allí labora. Se requiere un cambio en la orientación del sistema de salud, así como la garantía de condiciones de empleo digno y decente, junto con acciones para prevenir la violencia directa hacia las personas trabajadoras de las instituciones públicas de salud en Bogotá.


Background. Violence is a recognized public health problem that affects different spheres of society, including work environment in the field of health care, which requires policies and actions for its control. Objective. To identify situations of direct, structural and cultural violence perceived in the work environments of people working in public hospitals and the District Department of Health of Bogota. Materials and methods. A qualitative study from a social constructionist perspective, through focus groups and narrative analysis of the corresponding transcripts. Results. Structural violence in the public health sector has increased since the health system reform, which has led to an increase in direct violence, getting health workers involved in the denial of the right to health and competition processes and individualization of care; with respect to cultural violence, discrimination appears as the most important element having a negative effect on interpersonal relationships and rights violations. Conclusions. The Colombian health system neoliberal reforms have caused a critical issue around health practices organized in the public sector and the employment conditions of the staff who work there. A change in the orientation of the health system is required, as well as ensuring dignified and decent conditions of employment, with direct action to prevent violence against the people working in public health institutions in Bogotá.

10.
Inorg Chem ; 49(6): 2827-33, 2010 Mar 15.
Artículo en Inglés | MEDLINE | ID: mdl-20155927

RESUMEN

The CdCr(2)O(4) spinel transforms to a 10.6% denser new polymorph of the CaFe(2)O(4)-type structure at 10 GPa and 1100 degrees C. This new polymorph has a honeycomb-like structure because of double rutile-type chains formed by [Cr-O(6)] edge-shared octehedra. This crystal structure is prone to be magnetically frustrated and presents low-dimensional antiferromagnetism at 25 K < T < 150 K, accompanied by more complex interactions as the temperature decreases. These transitions are evidenced by magnetic susceptibility and heat capacity measurements. We also discuss a possible structural mechanism for the transformation.

11.
Anal Chim Acta ; 600(1-2): 97-104, 2007 Sep 26.
Artículo en Inglés | MEDLINE | ID: mdl-17903470

RESUMEN

An electronic tongue based on the transient response of an array of non-specific-response potentiometric sensors was developed. A sequential injection analysis (SIA) system was used in order to automate its training and operation. The use of the transient recording entails the dynamic nature of the sensor's response, which can be of high information content, of primary ions and also of interfering ions; these may better discriminated if the kinetic resolution is added. This work presents the extraction of significant information contained in the transient response of a sensor array formed by five all-solid-state potentiometric sensors. The tool employed was the Fourier transform, from which a number of coefficients were fed into an artificial neural network (ANN) model, used to perform a quantitative multidetermination. The studied case was the analysis of mixtures of calcium, sodium and potassium. Obtained performance is compared with the more traditional automated electronic tongue using final steady-state potentials.

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