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The piranha gut microbiome provides a selective lens into river water biodiversity.
da Silva, Sheila; Vuong, Paton; Amaral, João Ricardo Vidal; da Silva, Vicente Almeida Serafim; de Oliveira, Selma Soares; Vermelho, Alane Beatriz; Beale, David John; Bissett, Andrew; Whiteley, Andrew Steven; Kaur, Parwinder; Macrae, Andrew.
Afiliação
  • da Silva S; Programa Pós-Graduação de Biotecnologia Vegetal e Bioprocessos, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
  • Vuong P; Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
  • Amaral JRV; UWA School of Agriculture & Environment, University of Western Australia, Perth, Australia.
  • da Silva VAS; Programa Pós-Graduação de Biotecnologia Vegetal e Bioprocessos, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
  • de Oliveira SS; Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
  • Vermelho AB; Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
  • Beale DJ; Programa Pós-Graduação de Biotecnologia Vegetal e Bioprocessos, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
  • Bissett A; Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
  • Whiteley AS; Programa Pós-Graduação de Biotecnologia Vegetal e Bioprocessos, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
  • Kaur P; Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
  • Macrae A; Commonwealth Scientific and Industrial Research Organization (CSIRO), Environment, Dutton Park, QLD, Australia.
Sci Rep ; 14(1): 21518, 2024 09 14.
Article em En | MEDLINE | ID: mdl-39277613
ABSTRACT
Advances in omics technologies have enabled the in-depth study of microbial communities and their metabolic profiles from all environments. Here metagenomes were sampled from piranha (Serrasalmus rhombeus) and from river water from the Rio São Benedito (Amazon Basin). Shotgun metagenome sequencing was used to explore diversity and to test whether fish microbiomes are a good proxy for river microbiome studies. The results showed that the fish microbiomes were not significantly different from the river water microbiomes at higher taxonomic ranks. However, at the genus level, fish microbiome alpha diversity decreased, and beta diversity increased. This result repeated for functional gene abundances associated with specific metabolic categories (SEED level 3). A clear delineation between water and fish was seen for beta diversity. The piranha microbiome provides a good and representative subset of its river water microbiome. Variations seen in beta biodiversity were expected and can be explained by temporal variations in the fish microbiome in response to stronger selective forces on its biodiversity. Metagenome assembled genomes construction was better from the fish samples. This study has revealed that the microbiome of a piranha tells us a lot about its river water microbiome and function.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Biodiversidade / Rios / Microbioma Gastrointestinal Limite: Animals Idioma: En Revista: Sci Rep Ano de publicação: 2024 Tipo de documento: Article País de afiliação: Brasil País de publicação: Reino Unido
Texto completo
Adicionar na Minha BVS
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Biodiversidade / Rios / Microbioma Gastrointestinal Limite: Animals Idioma: En Revista: Sci Rep Ano de publicação: 2024 Tipo de documento: Article País de afiliação: Brasil País de publicação: Reino Unido