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Sea cucumber (Holothuria glaberrima) intestinal microbiome dataset from Puerto Rico, generated by shotgun sequencing.
Rivera-Lopez, Edwin Omar; Nieves-Morales, Rene; Melendez-Martinez, Gabriela; Paez-Diaz, Jessica Alejandra; Rodriguez-Carrio, Sofia Marie; Rodriguez-Ramos, Josue; Morales-Valle, Luis; Rios-Velazquez, Carlos.
Afiliação
  • Rivera-Lopez EO; Microbial Biotechnology and Bioprospecting Laboratory, Biology Department, University of Puerto Rico, Mayagüez, P.R. 00681-9000, United States.
  • Nieves-Morales R; Food Science and Technology Program, University of Puerto Rico at Mayagüez, P.R. 00681-9000, United States.
  • Melendez-Martinez G; Microbial Biotechnology and Bioprospecting Laboratory, Biology Department, University of Puerto Rico, Mayagüez, P.R. 00681-9000, United States.
  • Paez-Diaz JA; Microbial Biotechnology and Bioprospecting Laboratory, Biology Department, University of Puerto Rico, Mayagüez, P.R. 00681-9000, United States.
  • Rodriguez-Carrio SM; Microbial Biotechnology and Bioprospecting Laboratory, Biology Department, University of Puerto Rico, Mayagüez, P.R. 00681-9000, United States.
  • Rodriguez-Ramos J; Microbial Biotechnology and Bioprospecting Laboratory, Biology Department, University of Puerto Rico, Mayagüez, P.R. 00681-9000, United States.
  • Morales-Valle L; Pacific Northwest National Laboratory, Biological Sciences Division, WA, United States.
  • Rios-Velazquez C; Microbial Biotechnology and Bioprospecting Laboratory, Biology Department, University of Puerto Rico, Mayagüez, P.R. 00681-9000, United States.
Data Brief ; 54: 110421, 2024 Jun.
Article em En | MEDLINE | ID: mdl-38690316
ABSTRACT
The sea cucumber (H. glaberrima) is a species found in the shallow waters near coral reefs and seagrass beds in Puerto Rico. To characterize the microbial taxonomic composition and functional profiles present in the sea cucumber, total DNA was obtained from their intestinal system, fosmid libraries constructed, and subsequent sequencing was performed. The diversity profile displayed that the most predominant domain was Bacteria (76.56 %), followed by Viruses (23.24 %) and Archaea (0.04 %). Within the 11 phyla identified, the most abundant was Proteobacteria (73.16 %), followed by Terrabacteria group (3.20 %) and Fibrobacterota, Chlorobiota, Bacteroidota (FCB) superphylum (1.02 %). The most abundant species were Porvidencia rettgeri (21.77 %), Pseudomonas stutzeri (14.78 %), and Alcaligenes faecalis (5.00 %). The functional profile revealed that the most abundant functions are related to transporters, MISC (miscellaneous information systems), organic nitrogen, energy, and carbon utilization. The data collected in this project on the diversity and functional profiles of the intestinal system of the H. glaberrima provided a detailed view of its microbial ecology. These findings may motivate comparative studies aimed at understanding the role of the microbiome in intestinal regeneration.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE País/Região como assunto: Puerto rico Idioma: En Revista: Data Brief Ano de publicação: 2024 Tipo de documento: Article País de afiliação: Estados Unidos País de publicação: Holanda
Texto completo
Adicionar na Minha BVS
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE País/Região como assunto: Puerto rico Idioma: En Revista: Data Brief Ano de publicação: 2024 Tipo de documento: Article País de afiliação: Estados Unidos País de publicação: Holanda