Your browser doesn't support javascript.
loading
Identification of the accessible chromatin regions in six tissues in the soybean.
Huang, Mingkun; Zhang, Ling; Zhou, Limeng; Yung, Wai-Shing; Wang, Zhili; Xiao, Zhixia; Wang, Qianwen; Wang, Xin; Li, Man-Wah; Lam, Hon-Ming.
Afiliação
  • Huang M; School of Life Sciences and Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, SAR, PR China; Lushan Botanical Garden Jiangxi Province and Chinese Academy of Sciences, NO.9 Zhiqing Road, Lushan, Jiujiang, Jiangxi, PR
  • Zhang L; Lushan Botanical Garden Jiangxi Province and Chinese Academy of Sciences, NO.9 Zhiqing Road, Lushan, Jiujiang, Jiangxi, PR China.
  • Zhou L; School of Life Sciences and Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, SAR, PR China.
  • Yung WS; School of Life Sciences and Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, SAR, PR China.
  • Wang Z; School of Life Sciences and Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, SAR, PR China.
  • Xiao Z; School of Life Sciences and Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, SAR, PR China.
  • Wang Q; School of Life Sciences and Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, SAR, PR China.
  • Wang X; School of Life Sciences and Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, SAR, PR China.
  • Li MW; School of Life Sciences and Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, SAR, PR China. Electronic address: limanwah@cuhk.edu.hk.
  • Lam HM; School of Life Sciences and Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, SAR, PR China. Electronic address: honming@cuhk.edu.hk.
Genomics ; 114(3): 110364, 2022 05.
Article em En | MEDLINE | ID: mdl-35421559
Accessible chromatin regions (ACRs) are tightly associated with gene expressions in the genome. Conserved non-coding cis-regulatory elements, such as transcription factor binding motifs, are usually found in ACRs, indicating an essential regulatory role of ACRs in the plant genome architecture. However, there have been few studies on soybean ACRs, especially those focusing on specific tissues. Hence, in this study, with the convenient ATAC-seq, we identified the ACRs in six soybean tissues, including root, leaf bud, flower, flower bud, developing seed, and pod. In total, the ACRs occupied about 3.3% of the entire soybean genome. By integrating the results from RNA-seq and transcription factor (TF) ChIP-seq, ACRs were found to be tightly associated with gene expressions and TF binding capacities in soybean. Together, these data provide a comprehensive understanding of the genomic features of ACRs in soybean. As a collection of essential genomic resources, these processed data are made available at datahub.wildsoydb.org.
Assuntos
Palavras-chave
Texto completo
Adicionar na Minha BVS
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Glycine max / Cromatina Tipo de estudo: Diagnostic_studies / Prognostic_studies Idioma: En Revista: Genomics Assunto da revista: GENETICA Ano de publicação: 2022 Tipo de documento: Article País de publicação: Estados Unidos
Texto completo
Adicionar na Minha BVS
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Glycine max / Cromatina Tipo de estudo: Diagnostic_studies / Prognostic_studies Idioma: En Revista: Genomics Assunto da revista: GENETICA Ano de publicação: 2022 Tipo de documento: Article País de publicação: Estados Unidos