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The Genome of Rhyzopertha dominica (Fab.) (Coleoptera: Bostrichidae): Adaptation for Success.
Oppert, Brenda; Muszewska, Anna; Steczkiewicz, Kamil; Satovic-Vuksic, Eva; Plohl, Miroslav; Fabrick, Jeffrey A; Vinokurov, Konstantin S; Koloniuk, Igor; Johnston, J Spencer; Smith, Timothy P L; Guedes, Raul Narciso C; Terra, Walter R; Ferreira, Clélia; Dias, Renata O; Chaply, Konstantin A; Elpidina, Elena N; Tereshchenkova, Valeriia F; Mitchell, Robert F; Jenson, Audra J; McKay, Rachel; Shan, Tisheng; Cao, Xiaolong; Miao, Zelong; Xiong, Chao; Jiang, Haobo; Morrison, William R; Koren, Sergey; Schlipalius, David; Lorenzen, Marcé D; Bansal, Raman; Wang, Yu-Hui; Perkin, Lindsey; Poelchau, Monica; Friesen, Kenlee; Olmstead, Morgan L; Scully, Erin; Campbell, James F.
Afiliação
  • Oppert B; USDA ARS Center for Grain and Animal Health Research, 1515 College Ave., Manhattan, KS 66502, USA.
  • Muszewska A; Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5A, 02-106 Warsaw, Poland.
  • Steczkiewicz K; Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5A, 02-106 Warsaw, Poland.
  • Satovic-Vuksic E; Division of Molecular Biology, Ruder Boskovic Institute, Bijenicka 54, 10000 Zagreb, Croatia.
  • Plohl M; Division of Molecular Biology, Ruder Boskovic Institute, Bijenicka 54, 10000 Zagreb, Croatia.
  • Fabrick JA; USDA ARS U.S. Arid-Land Agricultural Research Center, Maricopa, AZ 85138, USA.
  • Vinokurov KS; Institute of Entomology, Biology Centre of the Czech Academy of Sciences, Branisovská 1160/31, 370 05 Ceské Budejovice, Czech Republic.
  • Koloniuk I; Institute of Plant Molecular Biology, Biology Centre of the Czech Academy of Sciences, Branisovská 1160/31, 370 05 Ceské Budejovice, Czech Republic.
  • Johnston JS; Department of Entomology, Texas A&M University, College Station, TX 77843, USA.
  • Smith TPL; USDA ARS U.S. Meat Animal Research Center, Clay Center, NE 68933, USA.
  • Guedes RNC; Departamento de Entomologia, Universidade Federal de Viçosa, Viçosa 36570-900, MG, Brazil.
  • Terra WR; Department of Biochemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes 748, São Paulo 05508-000, SP, Brazil.
  • Ferreira C; Department of Biochemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes 748, São Paulo 05508-000, SP, Brazil.
  • Dias RO; Institute of Biological Sciences, Federal University of Goiás, Av. Esperança s/n, Goiânia 74690-900, GO, Brazil.
  • Chaply KA; Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, 119991 Moscow, Russia.
  • Elpidina EN; A.N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119991 Moscow, Russia.
  • Tereshchenkova VF; Department of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia.
  • Mitchell RF; Department of Biology, University of Wisconsin Oshkosh, Oshkosh, WI 54901, USA.
  • Jenson AJ; Department of Biology, University of Wisconsin Oshkosh, Oshkosh, WI 54901, USA.
  • McKay R; Department of Biology, University of Wisconsin Oshkosh, Oshkosh, WI 54901, USA.
  • Shan T; Department of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
  • Cao X; Department of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
  • Miao Z; Department of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
  • Xiong C; Department of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
  • Jiang H; Department of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
  • Morrison WR; USDA ARS Center for Grain and Animal Health Research, 1515 College Ave., Manhattan, KS 66502, USA.
  • Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.
  • Schlipalius D; School of Biological Sciences, The University of Queensland, Brisbane 4072, QLD, Australia.
  • Lorenzen MD; Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, USA.
  • Bansal R; USDA Agricultural Research Service, Commodity Protection and Quality Research, 9611 S. Riverbend Ave., Parlier, CA 93648, USA.
  • Wang YH; Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, USA.
  • Perkin L; USDA Agricultural Research Service, Insect Control and Cotton Disease Research, 2771 F and B Road, College Station, TX 77845, USA.
  • Poelchau M; USDA Agricultural Research Service, National Agricultural Library, 10301 Baltimore, Ave., Beltsville, MD 20705, USA.
  • Friesen K; USDA ARS Center for Grain and Animal Health Research, 1515 College Ave., Manhattan, KS 66502, USA.
  • Olmstead ML; USDA ARS Center for Grain and Animal Health Research, 1515 College Ave., Manhattan, KS 66502, USA.
  • Scully E; USDA ARS Center for Grain and Animal Health Research, 1515 College Ave., Manhattan, KS 66502, USA.
  • Campbell JF; USDA ARS Center for Grain and Animal Health Research, 1515 College Ave., Manhattan, KS 66502, USA.
Genes (Basel) ; 13(3)2022 02 28.
Article em En | MEDLINE | ID: mdl-35328000
The lesser grain borer, Rhyzopertha dominica (F.) (Coleoptera: Bostrichidae), is a major global pest of cereal grains. Infestations are difficult to control as larvae feed inside grain kernels, and many populations are resistant to both contact insecticides and fumigants. We sequenced the genome of R. dominica to identify genes responsible for important biological functions and develop more targeted and efficacious management strategies. The genome was assembled from long read sequencing and long-range scaffolding technologies. The genome assembly is 479.1 Mb, close to the predicted genome size of 480.4 Mb by flow cytometry. This assembly is among the most contiguous beetle assemblies published to date, with 139 scaffolds, an N50 of 53.6 Mb, and L50 of 4, indicating chromosome-scale scaffolds. Predicted genes from biologically relevant groups were manually annotated using transcriptome data from adults and different larval tissues to guide annotation. The expansion of carbohydrase and serine peptidase genes suggest that they combine to enable efficient digestion of cereal proteins. A reduction in the copy number of several detoxification gene families relative to other coleopterans may reflect the low selective pressure on these genes in an insect that spends most of its life feeding internally. Chemoreceptor genes contain elevated numbers of pseudogenes for odorant receptors that also may be related to the recent ontogenetic shift of R. dominica to a diet consisting primarily of stored grains. Analysis of repetitive sequences will further define the evolution of bostrichid beetles compared to other species. The data overall contribute significantly to coleopteran genetic research.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Besouros / Inseticidas Limite: Animals País/Região como assunto: Caribe / Caribe ingles / Dominica Idioma: En Revista: Genes (Basel) Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Estados Unidos País de publicação: Suíça
Texto completo
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Besouros / Inseticidas Limite: Animals País/Região como assunto: Caribe / Caribe ingles / Dominica Idioma: En Revista: Genes (Basel) Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Estados Unidos País de publicação: Suíça