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Pediatric Somatic Tumor Sequencing Identifies Underlying Cancer Predisposition.
MacFarland, Suzanne P; Zelley, Kristin; Surrey, Lea F; Gallo, Daniel; Luo, Minjie; Raman, Pichai; Wertheim, Gerald; Hunger, Stephen P; Li, Marilyn M; Brodeur, Garrett M.
Afiliação
  • MacFarland SP; Division of Oncology, Department of Pediatrics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA.
  • Zelley K; Division of Oncology, Department of Pediatrics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA.
  • Surrey LF; Department of Pathology and Laboratory Medicine, The Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA.
  • Gallo D; Division of Genomic Diagnostics, Children's Hospital of Philadelphia, Philadelphia, PA.
  • Luo M; Division of Genomic Diagnostics, Children's Hospital of Philadelphia, Philadelphia, PA.
  • Raman P; Department of Pathology and Laboratory Medicine, The Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA.
  • Wertheim G; Division of Genomic Diagnostics, Children's Hospital of Philadelphia, Philadelphia, PA.
  • Hunger SP; Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA.
  • Li MM; Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA.
  • Brodeur GM; Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA.
Article em En | MEDLINE | ID: mdl-32783018
PURPOSE: The diagnosis of cancer predisposition in pediatric patients with cancer is vital for treatment decisions, surveillance, and management of at-risk family members. Somatic tumor testing can identify potential underlying constitutional variants that confer increased cancer risk. Here, we report the characteristics of constitutional variants identified through tumor testing. MATERIALS AND METHODS: Data were abstracted from medical record review of 1,023 patients who received inhouse somatic tumor testing over a 28-month period. Patients were identified for testing using referral criteria developed as a collaboration between genomic diagnostics, pathology, and oncology. Characteristics of patients who underwent constitutional testing, including family history and variant loss of heterozygosity, were tracked. RESULTS: From 1,023 patients who underwent somatic tumor sequencing in a 28-month period, 210 variants were identified in 141 patients (13.8%) that were concerning for cancer predisposition syndromes requiring intervention. A total of 73 variants in 41 patients have undergone clinical confirmatory testing thus far. Of these, 26 variants were confirmed to be constitutionally present (35.6%). Among patients tested, 23 (56.1%) of 41 total patients were diagnosed with a cancer predisposition syndrome. CONCLUSION: Our data demonstrate that more than one third of variants in tumor somatic sequencing that were concerning for underlying cancer predisposition were constitutionally confirmed. Overall, somatic tumor testing identified potential cancer predisposition syndromes in pediatric patients, and some would not have been identified on the basis of clinical history alone.

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Tipo de estudo: Prognostic_studies Idioma: En Revista: JCO Precis Oncol Ano de publicação: 2019 Tipo de documento: Article País de publicação: Estados Unidos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Tipo de estudo: Prognostic_studies Idioma: En Revista: JCO Precis Oncol Ano de publicação: 2019 Tipo de documento: Article País de publicação: Estados Unidos