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Geo-referenced population-specific microsatellite data across American continents, the MacroPopGen Database.
Lawrence, Elizabeth R; Benavente, Javiera N; Matte, Jean-Michel; Marin, Kia; Wells, Zachery R R; Bernos, Thaïs A; Krasteva, Nia; Habrich, Andrew; Nessel, Gabrielle A; Koumrouyan, Ramela Arax; Fraser, Dylan J.
Afiliação
  • Lawrence ER; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada. elizabeth-lawrence@outlook.com.
  • Benavente JN; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada.
  • Matte JM; School of Environment, University of Auckland, PO Box 92019, Auckland, 1142, New Zealand.
  • Marin K; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada.
  • Wells ZRR; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada.
  • Bernos TA; Golder Associates, 7250, rue du Mile End, 3e étage, Montréal, Québec, H2R 3A4, Canada.
  • Krasteva N; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada.
  • Habrich A; BT Engineering Inc., 100 Craig Henry Drive, Suite 201, Nepean, Ontario, K2G 5W3, Canada.
  • Nessel GA; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada.
  • Koumrouyan RA; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada.
  • Fraser DJ; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada.
Sci Data ; 6(1): 14, 2019 04 03.
Article em En | MEDLINE | ID: mdl-30944329
Population genetic data from nuclear DNA has yet to be synthesized to allow broad scale comparisons of intraspecific diversity versus species diversity. The MacroPopGen database collates and geo-references vertebrate population genetic data across the Americas from 1,308 nuclear microsatellite DNA studies, 897 species, and 9,090 genetically distinct populations where genetic differentiation (FST) was measured. Caribbean populations were particularly distinguished from North, Central, and South American populations, in having higher differentiation (FST = 0.12 vs. 0.07-0.09) and lower mean numbers of alleles (MNA = 4.11 vs. 4.84-5.54). While mammalian populations had lower MNA (4.86) than anadromous fish, reptiles, amphibians, freshwater fish, and birds (5.34-7.81), mean heterozygosity was largely similar across groups (0.57-0.63). Mean FST was consistently lowest in anadromous fishes (0.06) and birds (0.05) relative to all other groups (0.09-0.11). Significant differences in Family/Genera variance among continental regions or taxonomic groups were also observed. MacroPopGen can be used in many future applications including latitudinal analyses, spatial analyses (e.g. central-margin), taxonomic comparisons, regional assessments of anthropogenic impacts on biodiversity, and conservation of wild populations.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Vertebrados / Repetições de Microssatélites / Bases de Dados Genéticas Limite: Animals País/Região como assunto: America central / America do norte / America do sul Idioma: En Revista: Sci Data Ano de publicação: 2019 Tipo de documento: Article País de afiliação: Canadá País de publicação: Reino Unido
Texto completo
Adicionar na Minha BVS
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Vertebrados / Repetições de Microssatélites / Bases de Dados Genéticas Limite: Animals País/Região como assunto: America central / America do norte / America do sul Idioma: En Revista: Sci Data Ano de publicação: 2019 Tipo de documento: Article País de afiliação: Canadá País de publicação: Reino Unido