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A deep learning based strategy for identifying and associating mitotic activity with gene expression derived risk categories in estrogen receptor positive breast cancers.
Romo-Bucheli, David; Janowczyk, Andrew; Gilmore, Hannah; Romero, Eduardo; Madabhushi, Anant.
Afiliação
  • Romo-Bucheli D; Engineering Faculty, Universidad Nacional de Colombia, Bogotá, DC, Colombia.
  • Janowczyk A; Biomedical Engineering Department, Case Western Reserve University, Cleveland, Ohio.
  • Gilmore H; Department of Pathology, University Hospitals Cleveland Medical Center, Cleveland, Ohio.
  • Romero E; Engineering Faculty, Universidad Nacional de Colombia, Bogotá, DC, Colombia.
  • Madabhushi A; Biomedical Engineering Department, Case Western Reserve University, Cleveland, Ohio.
Cytometry A ; 91(6): 566-573, 2017 06.
Article em En | MEDLINE | ID: mdl-28192639
The treatment and management of early stage estrogen receptor positive (ER+) breast cancer is hindered by the difficulty in identifying patients who require adjuvant chemotherapy in contrast to those that will respond to hormonal therapy. To distinguish between the more and less aggressive breast tumors, which is a fundamental criterion for the selection of an appropriate treatment plan, Oncotype DX (ODX) and other gene expression tests are typically employed. While informative, these gene expression tests are expensive, tissue destructive, and require specialized facilities. Bloom-Richardson (BR) grade, the common scheme employed in breast cancer grading, has been shown to be correlated with the Oncotype DX risk score. Unfortunately, studies have also shown that the BR grade determined experiences notable inter-observer variability. One of the constituent categories in BR grading is the mitotic index. The goal of this study was to develop a deep learning (DL) classifier to identify mitotic figures from whole slides images of ER+ breast cancer, the hypothesis being that the number of mitoses identified by the DL classifier would correlate with the corresponding Oncotype DX risk categories. The mitosis detector yielded an average F-score of 0.556 in the AMIDA mitosis dataset using a 6-fold validation setup. For a cohort of 174 whole slide images with early stage ER+ breast cancer for which the corresponding Oncotype DX score was available, the distributions of the number of mitoses identified by the DL classifier was found to be significantly different between the high vs low Oncotype DX risk groups (P < 0.01). Comparisons of other risk groups, using both ODX score and histological grade, were also found to present significantly different automated mitoses distributions. Additionally, a support vector machine classifier trained to separate low/high Oncotype DX risk categories using the mitotic count determined by the DL classifier yielded a 83.19% classification accuracy. © 2017 International Society for Advancement of Cytometry.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Neoplasias da Mama / Interpretação de Imagem Assistida por Computador / Biomarcadores Tumorais / Receptor ErbB-2 / Máquina de Vetores de Suporte / Mitose Tipo de estudo: Etiology_studies / Prognostic_studies / Risk_factors_studies Limite: Female / Humans Idioma: En Revista: Cytometry A Ano de publicação: 2017 Tipo de documento: Article País de afiliação: Colômbia País de publicação: Estados Unidos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Neoplasias da Mama / Interpretação de Imagem Assistida por Computador / Biomarcadores Tumorais / Receptor ErbB-2 / Máquina de Vetores de Suporte / Mitose Tipo de estudo: Etiology_studies / Prognostic_studies / Risk_factors_studies Limite: Female / Humans Idioma: En Revista: Cytometry A Ano de publicação: 2017 Tipo de documento: Article País de afiliação: Colômbia País de publicação: Estados Unidos