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Chloroplast sequence of treegourd (Crescentia cujete, Bignoniaceae) to study phylogeography and domestication.
Moreira, Priscila Ambrósio; Mariac, Cédric; Scarcelli, Nora; Couderc, Marie; Rodrigues, Doriane Picanço; Clement, Charles R; Vigouroux, Yves.
Afiliação
  • Moreira PA; Post-Graduate Program in Botany, Instituto Nacional de Pesquisas da Amazônia (INPA), Av. André Araújo 2936, Petrópolis, 69067-375 Manaus, Amazonas, Brazil.
  • Mariac C; UMR DIADE, Institut de Recherche pour le Développement (IRD), 393 Avenue Agropolis, Montpellier, Cedex 5, France.
  • Scarcelli N; UMR DIADE, Institut de Recherche pour le Développement (IRD), 393 Avenue Agropolis, Montpellier, Cedex 5, France.
  • Couderc M; UMR DIADE, Institut de Recherche pour le Développement (IRD), 393 Avenue Agropolis, Montpellier, Cedex 5, France.
  • Rodrigues DP; Post-Graduate Program in Botany, Instituto Nacional de Pesquisas da Amazônia (INPA), Av. André Araújo 2936, Petrópolis, 69067-375 Manaus, Amazonas, Brazil; Laboratório de Evolução Aplicada, Universidade Federal do Amazonas (UFAM), 69077-000 Manaus, Amazonas, Brazil.
  • Clement CR; Post-Graduate Program in Botany, Instituto Nacional de Pesquisas da Amazônia (INPA), Av. André Araújo 2936, Petrópolis, 69067-375 Manaus, Amazonas, Brazil; Coordenação de Tecnologia e Inovação, INPA, Manaus, Amazonas, Brazil.
  • Vigouroux Y; UMR DIADE, Institut de Recherche pour le Développement (IRD), 393 Avenue Agropolis, Montpellier, Cedex 5, France.
Appl Plant Sci ; 4(10)2016 Oct.
Article em En | MEDLINE | ID: mdl-27785381
PREMISE OF THE STUDY: Crescentia cujete (Bignoniaceae) fruit rinds are traditionally used for storage vessels and handicrafts. We assembled its chloroplast genome and identified single-nucleotide polymorphisms (SNPs). METHODS AND RESULTS: Using a genome skimming approach, the whole chloroplast of C. cujete was assembled using 3,106,928 sequence reads of 150 bp. The chloroplast is 154,662 bp in length, structurally divided into a large single copy region (84,788 bp), a small single copy region (18,299 bp), and two inverted repeat regions (51,575 bp) with 88 genes annotated. By resequencing the whole chloroplast, we identified 66 SNPs in C. cujete (N = 30) and 68 SNPs in C. amazonica (N = 6). Nucleotide diversity was estimated at 1.1 × 10-3 and 3.5 × 10-3 for C. cujete and C. amazonica, respectively. CONCLUSIONS: This broadened C. cujete genetic toolkit will be important to study the origin, domestication, diversity, and phylogeography of treegourds in the Neotropics.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Appl Plant Sci Ano de publicação: 2016 Tipo de documento: Article País de afiliação: Brasil País de publicação: Estados Unidos
Texto completo
Adicionar na Minha BVS
Imprimir
XML
PubMed Links
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Appl Plant Sci Ano de publicação: 2016 Tipo de documento: Article País de afiliação: Brasil País de publicação: Estados Unidos