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Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031.
Guarischi-Sousa, Rodrigo; Puigvert, Marina; Coll, Núria S; Siri, María Inés; Pianzzola, María Julia; Valls, Marc; Setubal, João C.
Afiliação
  • Guarischi-Sousa R; Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
  • Puigvert M; Department of Genetics, University of Barcelona and Centre for Research in Agricultural Genomics (CRAG), Bellaterra, Catalonia, Spain.
  • Coll NS; Department of Genetics, University of Barcelona and Centre for Research in Agricultural Genomics (CRAG), Bellaterra, Catalonia, Spain.
  • Siri MI; Departamento de Biociencias, Cátedra de Microbiología, Facultad de Química, Universidad de la República, Montevideo, Uruguay.
  • Pianzzola MJ; Departamento de Biociencias, Cátedra de Microbiología, Facultad de Química, Universidad de la República, Montevideo, Uruguay.
  • Valls M; Department of Genetics, University of Barcelona and Centre for Research in Agricultural Genomics (CRAG), Bellaterra, Catalonia, Spain.
  • Setubal JC; Instituto de Química, Universidade de São Paulo, São Paulo, Brazil ; Biocomplexity Institute, Virginia Tech, Blacksburg, VA USA.
Stand Genomic Sci ; 11: 7, 2016.
Article em En | MEDLINE | ID: mdl-26779304
Ralstonia solanacearum is the causative agent of bacterial wilt of potato. Ralstonia solanacearum strain UY031 belongs to the American phylotype IIB, sequevar 1, also classified as race 3 biovar 2. Here we report the completely sequenced genome of this strain, the first complete genome for phylotype IIB, sequevar 1, and the fourth for the R. solanacearum species complex. In addition to standard genome annotation, we have carried out a curated annotation of type III effector genes, an important pathogenicity-related class of genes for this organism. We identified 60 effector genes, and observed that this effector repertoire is distinct when compared to those from other phylotype IIB strains. Eleven of the effectors appear to be nonfunctional due to disruptive mutations. We also report a methylome analysis of this genome, the first for a R. solanacearum strain. This analysis helped us note the presence of a toxin gene within a region of probable phage origin, raising the hypothesis that this gene may play a role in this strain's virulence.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Tipo de estudo: Prognostic_studies Idioma: En Revista: Stand Genomic Sci Ano de publicação: 2016 Tipo de documento: Article País de afiliação: Brasil País de publicação: Reino Unido

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Tipo de estudo: Prognostic_studies Idioma: En Revista: Stand Genomic Sci Ano de publicação: 2016 Tipo de documento: Article País de afiliação: Brasil País de publicação: Reino Unido