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Genome-wide analysis of the homeodomain-leucine zipper (HD-ZIP) gene family in peach (Prunus persica).
Zhang, C H; Ma, R J; Shen, Z J; Sun, X; Korir, N K; Yu, M L.
Afiliação
  • Zhang CH; Institute of Horticulture, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, China.
  • Ma RJ; Institute of Horticulture, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, China.
  • Shen ZJ; Institute of Horticulture, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, China.
  • Sun X; College of Horticulture, Nanjing Agricultural University, Nanjing, Jiangsu, China.
  • Korir NK; Department of Agricultural Technology, Kenyatta University, Nairobi, Kenya.
  • Yu ML; Institute of Horticulture, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, China mly1008@aliyun.com.
Genet Mol Res ; 13(2): 2654-68, 2014 Apr 08.
Article em En | MEDLINE | ID: mdl-24782054
In this study, 33 homeodomain-leucine zipper (HD-ZIP) genes were identified in peach using the HD-ZIP amino acid sequences of Arabidopsis thaliana as a probe. Based on the phylogenetic analysis and the individual gene or protein characteristics, the HD-ZIP gene family in peach can be classified into 4 subfamilies, HD-ZIP I, II, III, and IV, containing 14, 7, 4, and 8 members, respectively. The most closely related peach HD-ZIP members within the same subfamilies shared very similar gene structure in terms of either intron/exon numbers or lengths. Almost all members of the same subfamily shared common motif compositions, thereby implying that the HD-ZIP proteins within the same subfamily may have functional similarity. The 33 peach HD-ZIP genes were distributed across scaffolds 1 to 7. Although the primary structure varied among HD-ZIP family proteins, their tertiary structures were similar. The results from this study will be useful in selecting candidate genes from specific subfamilies for functional analysis.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Zíper de Leucina / Proteínas de Homeodomínio / Genoma de Planta Tipo de estudo: Prognostic_studies Idioma: En Revista: Genet Mol Res Assunto da revista: BIOLOGIA MOLECULAR / GENETICA Ano de publicação: 2014 Tipo de documento: Article País de afiliação: China País de publicação: Brasil
Texto completo
Adicionar na Minha BVS
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Zíper de Leucina / Proteínas de Homeodomínio / Genoma de Planta Tipo de estudo: Prognostic_studies Idioma: En Revista: Genet Mol Res Assunto da revista: BIOLOGIA MOLECULAR / GENETICA Ano de publicação: 2014 Tipo de documento: Article País de afiliação: China País de publicação: Brasil