Your browser doesn't support javascript.
loading
Impact of an intragenic retrotransposon on the structural integrity and evolution of a major isoprenoid biosynthesis pathway gene in Hevea brasiliensis.
Uthup, Thomas Kadampanattu; Saha, Thakurdas; Ravindran, Minimol; Bini, K.
Afiliação
  • Uthup TK; Genome Analysis Laboratory, Rubber Research Institute of India, Rubber Board, P O, Kottayam, Kerala Pin-686009, India. Electronic address: thomasku79@gmail.com.
Plant Physiol Biochem ; 73: 176-88, 2013 Dec.
Article em En | MEDLINE | ID: mdl-24128694
Isoprenoids belong to a large family of structurally and functionally different natural compounds found universally from prokaryotes to higher animals and plants. In Hevea brasiliensis, the commercially important cis-polyisoprene (rubber) is synthesised as part of its defence mechanism in addition to other common isoprenoids like phytosterols, growth hormones etc. Farnesyl diphosphate synthase (FDPS) is a key enzyme in this process which catalyses the conversion of isoprene units into polyisoprene. Although prior sequence information is available, the structural variants of the FDPS gene presently existing in Hevea population are largely unknown. Since gene structure has a major role in gene regulation, extensive sequence analysis of this gene from different genotypes was carried out to identify the prevailing structural variants. We identified several SNPs and large indels which were associated with a partial transposable element (TE). Modification of key regulatory motifs and splice sites induced by the retroelement was also identified in the first intron. Screening of popular rubber clones, wild germplasm accessions and Hevea species revealed that the retroelement is responsible for the generation of new alleles with varying degrees of sequence homology. Segregation analysis of a progeny population confirmed that the alleles are not paralogs and are inherited in a Mendelian mode. Our findings suggest that the first intron of the FDPS gene has been subjected to various chromosomal rearrangements due to the interaction of a retrotransposon, resulting in novel alleles which may substantially contribute towards the evolution of this major gene in rubber. Moreover, the results indicate the possible existence of a retrotransposon-mediated epigenetic gene regulatory mechanism in Hevea.
Assuntos
Palavras-chave

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Genes de Plantas / Retroelementos / Evolução Molecular / Hevea / Hemiterpenos / Geraniltranstransferase / Redes e Vias Metabólicas Tipo de estudo: Prognostic_studies País/Região como assunto: America do sul / Brasil Idioma: En Revista: Plant Physiol Biochem Assunto da revista: BIOQUIMICA / BOTANICA Ano de publicação: 2013 Tipo de documento: Article País de publicação: França

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Genes de Plantas / Retroelementos / Evolução Molecular / Hevea / Hemiterpenos / Geraniltranstransferase / Redes e Vias Metabólicas Tipo de estudo: Prognostic_studies País/Região como assunto: America do sul / Brasil Idioma: En Revista: Plant Physiol Biochem Assunto da revista: BIOQUIMICA / BOTANICA Ano de publicação: 2013 Tipo de documento: Article País de publicação: França