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Emergence and Spread of the SARS-CoV-2 Omicron Variant in Alberta Communities Revealed by Wastewater Monitoring
Casey RJ Hubert; Nicole Acosta; Barbara J Waddell; Maria E Hasing; Yuanyuan Qiu; Meghan Fuzzen; Nathanael BJ Harper; Maria A Bautista; Tiejun Gao; Chloe Papparis; Jenn Van Doorn; Kristine Du; Kevin Xiang; Leslie Chan; Laura Vivas; Puja Pradhan; Janine McCalder; Kashtin Low; Whitney E England; John Conly; M Cathryn Ryan; Gopal Achari; Jia Hu; Jason L Cabaj; Chris Sikora; Larry Svenson; Nathan Zelyas; Mark Servos; Jon Meddings; Steve E Hrudey; Kevin Frankowski; Michael D Parkins; Xiaoli Pang; Bonita E Lee.
Afiliación
  • Casey RJ Hubert; University of Calgary
  • Nicole Acosta; University of Calgary
  • Barbara J Waddell; University of Calgary
  • Maria E Hasing; University of Alberta
  • Yuanyuan Qiu; University of Alberta
  • Meghan Fuzzen; University of Waterloo
  • Nathanael BJ Harper; University of Waterloo
  • Maria A Bautista; University of Calgary
  • Tiejun Gao; University of Alberta
  • Chloe Papparis; University of Calgary
  • Jenn Van Doorn; University of Calgary
  • Kristine Du; University of Calgary
  • Kevin Xiang; University of Calgary
  • Leslie Chan; University of Calgary
  • Laura Vivas; University of Calgary
  • Puja Pradhan; University of Calgary
  • Janine McCalder; University of Calgary
  • Kashtin Low; University of Calgary
  • Whitney E England; University of Calgary
  • John Conly; University of Calgary
  • M Cathryn Ryan; University of Calgary
  • Gopal Achari; University of Calgary
  • Jia Hu; University of Calgary
  • Jason L Cabaj; University of Calgary
  • Chris Sikora; University of Calgary
  • Larry Svenson; Alberta Health
  • Nathan Zelyas; University of Alberta
  • Mark Servos; University of Waterloo
  • Jon Meddings; University of Calgary
  • Steve E Hrudey; University of Alberta
  • Kevin Frankowski; University of Calgary
  • Michael D Parkins; University of Calgary
  • Xiaoli Pang; University of Alberta
  • Bonita E Lee; University of Alberta
Preprint en En | PREPRINT-MEDRXIV | ID: ppmedrxiv-22272055
ABSTRACT
Wastewater monitoring of SARS-CoV-2 allows for early detection and monitoring of COVID-19 burden in communities and can track specific variants of concern. Targeted assays enabled relative proportions of SARS-CoV-2 Omicron and Delta variants to be determined across 30 municipalities covering >75% of the province of Alberta (pop. 4.5M) in Canada, from November 2021 to January 2022. Larger cities like Calgary and Edmonton exhibited a more rapid emergence of Omicron relative to smaller and more remote municipalities. Notable exceptions were Banff, a small international resort town, and Fort McMurray, a more remote northern city with a large fly-in worker population. The integrated wastewater signal revealed that the Omicron variant represented close to 100% of SARS-CoV-2 burden prior to the observed increase in newly diagnosed clinical cases throughout Alberta, which peaked two weeks later. These findings demonstrate that wastewater monitoring offers early and reliable population-level results for establishing the extent and spread of emerging pathogens including SARS-CoV-2 variants.
Licencia
cc_by_nc_nd
Texto completo: 1 Colección: 09-preprints Base de datos: PREPRINT-MEDRXIV Tipo de estudio: Prognostic_studies Idioma: En Año: 2022 Tipo del documento: Preprint
Texto completo: 1 Colección: 09-preprints Base de datos: PREPRINT-MEDRXIV Tipo de estudio: Prognostic_studies Idioma: En Año: 2022 Tipo del documento: Preprint