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Omicron mutations enhance infectivity and reduce antibody neutralization of SARS-CoV-2 virus-like particles
Abdullah Muhammad Syed; Alison Ciling; Mir M. Khalid; Bharath Sreekumar; Pei-Yi Chen; G. Renuka Kumar; Ines Silva; Bilal Milbes; Noah Kojima; Victoria Hess; Maria Shacreaw; Lauren Lopez; Matthew Brobeck; Fred Turner; Lee Spraggon; Taha Y. Taha; Takako Tabata; Irene P. Chen; Melanie Ott; Jennifer A. Doudna.
Afiliación
  • Abdullah Muhammad Syed; Gladstone Institutes
  • Alison Ciling; Gladstone Institutes, San Francisco, CA, USA; Innovative Genomics Institute, University of California, Berkeley, Berkeley, CA, USA
  • Mir M. Khalid; Gladstone Institutes, San Francisco, CA, USA
  • Bharath Sreekumar; Gladstone Institutes, San Francisco, CA, USA
  • Pei-Yi Chen; Gladstone Institutes, San Francisco, CA, USA
  • G. Renuka Kumar; Gladstone Institutes, San Francisco, CA, USA
  • Ines Silva; Curative Inc., 430 S Cataract Ave San Dimas, CA, 91773-2902, USA
  • Bilal Milbes; Curative Inc., 430 S Cataract Ave San Dimas, CA, 91773-2902, USA
  • Noah Kojima; Curative Inc., 430 S Cataract Ave San Dimas, CA, 91773-2902, USA
  • Victoria Hess; Curative Inc., 430 S Cataract Ave San Dimas, CA, 91773-2902, USA
  • Maria Shacreaw; Curative Inc., 430 S Cataract Ave San Dimas, CA, 91773-2902, USA
  • Lauren Lopez; Curative Inc., 430 S Cataract Ave San Dimas, CA, 91773-2902, USA
  • Matthew Brobeck; Curative Inc., 430 S Cataract Ave San Dimas, CA, 91773-2902, USA
  • Fred Turner; Curative Inc., 430 S Cataract Ave San Dimas, CA, 91773-2902, USA
  • Lee Spraggon; Curative Inc., 430 S Cataract Ave San Dimas, CA, 91773-2902, USA
  • Taha Y. Taha; Gladstone Institutes, San Francisco, CA, USA
  • Takako Tabata; Gladstone Institutes, San Francisco, CA, USA
  • Irene P. Chen; Gladstone Institutes, San Francisco, CA, USA
  • Melanie Ott; Gladstone Institutes, San Francisco, CA, USA; Department of Medicine, University of California, San Francisco, CA, USA
  • Jennifer A. Doudna; Gladstone Institutes, San Francisco, CA, USA; Innovative Genomics Institute, University of California, Berkeley, Berkeley, CA, USA
Preprint en En | PREPRINT-MEDRXIV | ID: ppmedrxiv-21268048
ABSTRACT
The Omicron SARS-CoV-2 virus contains extensive sequence changes relative to the earlier arising B.1, B.1.1 and Delta SARS-CoV-2 variants that have unknown effects on viral infectivity and response to existing vaccines. Using SARS-CoV-2 virus-like particles (SC2-VLPs), we examined mutations in all four structural proteins and found that Omicron showed 3-fold higher capsid assembly and cell entry relative to Delta, a property conferred by S and N protein mutations. Thirty-eight antisera samples from individuals vaccinated with Pfizer/BioNTech, Moderna, Johnson & Johnson vaccines and convalescent sera from unvaccinated COVID-19 survivors had 15-fold lower efficacy to prevent cell transduction by VLPs containing the Omicron mutations relative to the ancestral B.1 spike protein. A third dose of Pfizer vaccine elicited substantially higher neutralization titers against Omicron, resulting in detectable neutralizing antibodies in 8 out of 8 subjects compared to 1 out of 8 pre-boost. Furthermore, the monoclonal antibody therapeutics Casirivimab and Imdevimab had robust neutralization activity against B.1, B.1.1 or Delta VLPs but no detectable neutralization of Omicron VLPs. Our results suggest that Omicron is more efficient at assembly and cell entry compared to Delta, and the antibody response triggered by existing vaccines or previous infection, at least prior to boost, will have limited ability to neutralize Omicron. In addition, some currently available monoclonal antibodies will not be useful in treating Omicron-infected patients. One-Sentence SummaryOmicron SARS-CoV-2 virus-like particles have enhanced infectivity that is only weakly neutralized by vaccination without boost or prior infection, or antibody therapeutics.
Licencia
cc_by_nc_nd
Texto completo: 1 Colección: 09-preprints Base de datos: PREPRINT-MEDRXIV Tipo de estudio: Prognostic_studies Idioma: En Año: 2021 Tipo del documento: Preprint
Texto completo: 1 Colección: 09-preprints Base de datos: PREPRINT-MEDRXIV Tipo de estudio: Prognostic_studies Idioma: En Año: 2021 Tipo del documento: Preprint