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COVID-19 Risk Stratification and Mortality Prediction in Hospitalized Indian Patients
Shanmukh Alle; Samreen Siddiqui; Akshay Kanakan; Akshit Garg; Akshaya Karthikeyan; Neha Mishra; Swati Waghdhare; Akansha Tyagi; Bansidhar Tarai; Pranjal Pratim Hazarika; Poonam Das; Sandeep Budhiraja; Vivek Nangia; Arun Dewan; Ramanathan Sethuraman; C. Subramanian; Mashrin Srivastava; Avinash Chakravarthi; Johnny Jacob; Madhuri Namagiri; Varma Konala; Debasish Dash; Sujeet Jha; Rajesh Pandey; Anurag Agrawal; P K Vinod; U. Deva Priyakumar.
Afiliación
  • Shanmukh Alle; Center for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad 500032, India
  • Samreen Siddiqui; Max Super Speciality Hospital (A Unit of Devki Devi Foundation), Max Healthcare, Delhi-1100017, India.
  • Akshay Kanakan; Genomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi-110007, India.
  • Akshit Garg; Center for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad 500032, India.
  • Akshaya Karthikeyan; Center for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad 500032, India.
  • Neha Mishra; Genomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi-110007, India.
  • Swati Waghdhare; Max Super Speciality Hospital (A Unit of Devki Devi Foundation), Max Healthcare, Delhi-1100017, India.
  • Akansha Tyagi; Max Super Speciality Hospital (A Unit of Devki Devi Foundation), Max Healthcare, Delhi-1100017, India.
  • Bansidhar Tarai; Max Super Speciality Hospital (A Unit of Devki Devi Foundation), Max Healthcare, Delhi-1100017, India.
  • Pranjal Pratim Hazarika; Max Super Speciality Hospital (A Unit of Devki Devi Foundation), Max Healthcare, Delhi-1100017, India.
  • Poonam Das; Max Super Speciality Hospital (A Unit of Devki Devi Foundation), Max Healthcare, Delhi-1100017, India.
  • Sandeep Budhiraja; Max Super Speciality Hospital (A Unit of Devki Devi Foundation), Max Healthcare, Delhi-1100017, India.
  • Vivek Nangia; Max Super Speciality Hospital (A Unit of Devki Devi Foundation), Max Healthcare, Delhi-1100017, India.
  • Arun Dewan; Max Super Speciality Hospital (A Unit of Devki Devi Foundation), Max Healthcare, Delhi-1100017, India.
  • Ramanathan Sethuraman; Intel Technology India Private Limited, Bangalore, India.
  • C. Subramanian; Intel Technology India Private Limited, Bangalore, India.
  • Mashrin Srivastava; Intel Technology India Private Limited, Bangalore, India.
  • Avinash Chakravarthi; Intel Technology India Private Limited, Bangalore, India.
  • Johnny Jacob; Intel Technology India Private Limited, Bangalore, India.
  • Madhuri Namagiri; Intel Technology India Private Limited, Bangalore, India.
  • Varma Konala; Intel Technology India Private Limited, Bangalore, India.
  • Debasish Dash; Genomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB) Delhi-110007, India.
  • Sujeet Jha; Max Super Speciality Hospital (A Unit of Devki Devi Foundation), Max Healthcare, Delhi-1100017, India.
  • Rajesh Pandey; Genomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi-110007, India.
  • Anurag Agrawal; Genomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi-110007, India
  • P K Vinod; Center for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad 500032, India.
  • U. Deva Priyakumar; Center for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad 500032, India.
Preprint en En | PREPRINT-MEDRXIV | ID: ppmedrxiv-20248524
ABSTRACT
The clinical course of coronavirus disease 2019 (COVID-19) infection is highly variable with the vast majority recovering uneventfully but a small fraction progressing to severe disease and death. Appropriate and timely supportive care can reduce mortality and it is critical to evolve better patient risk stratification based on simple clinical data, so as to perform effective triage during strains on the healthcare infrastructure. This study presents risk stratification and mortality prediction models based on usual clinical data from 544 COVID-19 patients from New Delhi, India using machine learning methods. An XGboost classifier yielded the best performance on risk stratification (F1 score of 0.81). A logistic regression model yielded the best performance on mortality prediction (F1 score of 0.71). Significant biomarkers for predicting risk and mortality were identified. Examination of the data in comparison to a similar dataset with a Wuhan cohort of 375 patients was undertaken to understand the much lower mortality rates in India and the possible reasons thereof. The comparison indicated higher survival rate in the Delhi cohort even when patients had similar parameters as the Wuhan patients who died. Steroid administration was very frequent in Delhi patients, especially in surviving patients whose biomarkers indicated severe disease. This study helps in identifying the high-risk patient population and suggests treatment protocols that may be useful in countries with high mortality rates.
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Texto completo: 1 Colección: 09-preprints Base de datos: PREPRINT-MEDRXIV Tipo de estudio: Cohort_studies / Observational_studies / Prognostic_studies Idioma: En Año: 2020 Tipo del documento: Preprint
Texto completo: 1 Colección: 09-preprints Base de datos: PREPRINT-MEDRXIV Tipo de estudio: Cohort_studies / Observational_studies / Prognostic_studies Idioma: En Año: 2020 Tipo del documento: Preprint