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Validation of a Derived International Patient Severity Phenotype to Support COVID-19 Analytics from Electronic Health Record Data
Jeffrey G. Klann; Griffin M Weber; Hossein Estiri; Bertrand Moal; Paul Avillach; Chuan Hong; Victor M Castro; Thomas Maulhardt; Amelia LM Tan; Alon Geva; Brett K Beaulieu-Jones; Alberto Malovini; Andrew M South; Shyam Visweswaran; Gilbert S Omenn; Kee Yuan Ngiam; Kenneth D Mandl; Martin Boeker; Karen L Olson; Danielle L Mowery; Michele Morris; Robert W Follett; David A Hanauer; Riccardo Bellazzi; Jason H Moore; Ne Hooi Will Loh; Douglas S Bell; Kavishwar Wagholikar; Luca Chiovato; Valentina Tibollo; Siegbert Rieg; Anthony LLJ Li; Vianney Jouhet; Emilly Schriver; Malarkodi J Samayamuthu; Zongqi Xia; - The Consortium for Clinical Characterization of COVID-19 by EHR (4CE); Isaac S Kohane; Gabriel A Brat; Shawn N Murphy.
Afiliación
  • Jeffrey G. Klann; Massachusetts General Hospital and Harvard Medical School
  • Griffin M Weber; Harvard Medical School
  • Hossein Estiri; Massachusetts General Hospital and Harvard Medical School
  • Bertrand Moal; Bordeaux University Hospital
  • Paul Avillach; Harvard Medical School
  • Chuan Hong; Harvard Medical School
  • Victor M Castro; Mass General Brigham
  • Thomas Maulhardt; Institute of Medical Biometry and Statistics, Medical Center, University of Freiburg
  • Amelia LM Tan; Harvard Medical School
  • Alon Geva; Boston Children's Hospital
  • Brett K Beaulieu-Jones; Harvard Medical School
  • Alberto Malovini; Istituti Clinici Scientifici Maugeri SpA SB IRCCS
  • Andrew M South; Brenner Children's Hospital, Wake Forest School of Medicine
  • Shyam Visweswaran; University of Pittsburgh
  • Gilbert S Omenn; University of Michigan
  • Kee Yuan Ngiam; National Univerisity Health Systems Singapore
  • Kenneth D Mandl; Harvard Medical School, Boston Children's Hospital
  • Martin Boeker; Faculty of Medicine and Medical Center, University of Freiburg
  • Karen L Olson; Boston Children's Hospital
  • Danielle L Mowery; University of Pennsylvania Perelman School of Medicine
  • Michele Morris; University of Pittsburgh
  • Robert W Follett; David Geffen School of Medicine at UCLA
  • David A Hanauer; University of Michigan Medical School
  • Riccardo Bellazzi; University of Pavia, Italy and IRCCS ICS Maugeri, Italy
  • Jason H Moore; University of Pennsylvania Perelman School of Medicine
  • Ne Hooi Will Loh; National University Health System, Singapore
  • Douglas S Bell; David Geffen School of Medicine at UCLA
  • Kavishwar Wagholikar; Massachusetts General Hospital
  • Luca Chiovato; IRCCS ICS Maugeri, Pavia and Department of Internal Medicine and Medical Therapy, University of Pavia
  • Valentina Tibollo; IRCCS ICS Maugeri, Pavia
  • Siegbert Rieg; Medical Center - University of Freiburg
  • Anthony LLJ Li; National Center for Infectious Diseases, Tan Tock Seng Hospital, Singapore
  • Vianney Jouhet; Bordeaux University Hospital / ERIAS - Inserm U1219 BPH
  • Emilly Schriver; University of Pennsylvania Health System
  • Malarkodi J Samayamuthu; University of Pittsburgh
  • Zongqi Xia; University of Pittsburgh
  • - The Consortium for Clinical Characterization of COVID-19 by EHR (4CE);
  • Isaac S Kohane; Harvard Medical School
  • Gabriel A Brat; Harvard Medical School
  • Shawn N Murphy; Massachusetts General Hospital and Mass General Brigham
Preprint en En | PREPRINT-MEDRXIV | ID: ppmedrxiv-20201855
ABSTRACT
AO_SCPLOWBSTRACTC_SCPLOWO_ST_ABSIntroductionC_ST_ABSThe Consortium for Clinical Characterization of COVID-19 by EHR (4CE) includes hundreds of hospitals internationally using a federated computational approach to COVID-19 research using the EHR. ObjectiveWe sought to develop and validate a standard definition of COVID-19 severity from readily accessible EHR data across the Consortium. MethodsWe developed an EHR-based severity algorithm and validated it on patient hospitalization data from 12 4CE clinical sites against the outcomes of ICU admission and/or death. We also used a machine learning approach to compare selected predictors of severity to the 4CE algorithm at one site. ResultsThe 4CE severity algorithm performed with pooled sensitivity of 0.73 and specificity 0.83 for the combined outcome of ICU admission and/or death. The sensitivity of single code categories for acuity were unacceptably inaccurate - varying by up to 0.65 across sites. A multivariate machine learning approach identified codes resulting in mean AUC 0.956 (95% CI 0.952, 0.959) compared to 0.903 (95% CI 0.886, 0.921) using expert-derived codes. Billing codes were poor proxies of ICU admission, with 49% precision and recall compared against chart review at one partner institution. DiscussionWe developed a proxy measure of severity that proved resilient to coding variability internationally by using a set of 6 code classes. In contrast, machine-learning approaches may tend to overfit hospital-specific orders. Manual chart review revealed discrepancies even in the gold standard outcomes, possibly due to pandemic conditions. ConclusionWe developed an EHR-based algorithm for COVID-19 severity and validated it at 12 international sites.
Licencia
cc_by_nc_nd
Texto completo: 1 Colección: 09-preprints Base de datos: PREPRINT-MEDRXIV Tipo de estudio: Prognostic_studies Idioma: En Año: 2020 Tipo del documento: Preprint
Texto completo: 1 Colección: 09-preprints Base de datos: PREPRINT-MEDRXIV Tipo de estudio: Prognostic_studies Idioma: En Año: 2020 Tipo del documento: Preprint