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Bacterial pulmonary superinfections are associated with unfavourable outcomes in critically ill COVID-19 patients
Philipp K Buehler; Annelies S Zinkernagel; Daniel Andrea Hofmaenner; Pedro David Wendel Garcia; Claudio T Acevedo; Alejandro Gomez-Mejia; Srikanth Mairpady Shambat; Federica Andreoni; Maibach Maibach; Jan Bartussek; Matthias Hilty; Pascal M Frey; Reto A Schuepbach; Silvio Daniel Brugger.
Afiliación
  • Philipp K Buehler; Institute for Intensive Care Medicine, University Hospital Zurich and University of Zurich, Zurich, Switzerland
  • Annelies S Zinkernagel; Department of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
  • Daniel Andrea Hofmaenner; Institute for Intensive Care Medicine, University Hospital Zurich and University of Zurich, Zurich, Switzerland
  • Pedro David Wendel Garcia; Institute for Intensive Care Medicine, University Hospital Zurich and University of Zurich, Zurich, Switzerland
  • Claudio T Acevedo; Department of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
  • Alejandro Gomez-Mejia; Department of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
  • Srikanth Mairpady Shambat; Department of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
  • Federica Andreoni; Department of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
  • Maibach Maibach; University of Zurich
  • Jan Bartussek; University of Zurich
  • Matthias Hilty; Institute for Intensive Care Medicine, University Hospital Zurich and University of Zurich, Zurich, Switzerland
  • Pascal M Frey; Department of General Internal Medicine, Bern University Hospital, University of Bern, Bern, Switzerland
  • Reto A Schuepbach; Institute for Intensive Care Medicine, University Hospital Zurich and University of Zurich, Zurich, Switzerland
  • Silvio Daniel Brugger; Department of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
Preprint en En | PREPRINT-MEDRXIV | ID: ppmedrxiv-20191882
ABSTRACT
Objectives While superinfections are associated with unfavourable disease course, their impact on clinical outcomes in critically ill COVID-19 patients remains largely unknown. We aimed to investigate the burden of superinfections in COVID-19 patients. Methods In this prospective single centre cohort study in an intensive care setting patients aged [≥] 18 years with COVID-19 acute respiratory distress syndrome were assessed for concomitant microbial infections by longitudinal analysis of tracheobronchial secretions, bronchoalveolar lavages and blood. Our primary outcome was ventilator-free survival on day 28 in patients with and without clinically relevant superinfection. Further outcomes included the association of superinfection with ICU length of stay, incidence of bacteremia, viral reactivations, and fungal colonization. Results In 45 critically ill COVID-19 patients, we identified 19 patients with superinfections (42.2%) by longitudinal analysis of 433 TBS, 35 BAL and 455 blood samples, respectively. On average, superinfections were detected on day 10 after ICU admission. The most frequently isolated clinically relevant bacteria were Enterobacteriaceae, Streptococcus pneumoniae, and Pseudomonas aeruginosa. Ventilator-free survival was substantially lower in patients with superinfection (subhazard ratio 0.37, 95%-CI 0.15-0.90, p=0.028). Patients with pulmonary superinfections more often had bacteraemia, virus reactivations, yeast colonization, and needed ICU treatment for a significantly longer time. Conclusions The detection of superinfections was frequent and associated with reduced ventilator-free survival. Despite empirical antibiotic therapy, superinfections lead to an extended ICU stay in COVID 19 patients. Longitudinal microbiological sampling in COVID-19 patients could allow targeted antimicrobial therapy, and therefore minimize the use of broad-spectrum and reserve antibiotics.
Licencia
cc_by_nc_nd
Texto completo: 1 Colección: 09-preprints Base de datos: PREPRINT-MEDRXIV Tipo de estudio: Cohort_studies / Observational_studies / Prognostic_studies Idioma: En Año: 2020 Tipo del documento: Preprint
Texto completo: 1 Colección: 09-preprints Base de datos: PREPRINT-MEDRXIV Tipo de estudio: Cohort_studies / Observational_studies / Prognostic_studies Idioma: En Año: 2020 Tipo del documento: Preprint