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Multiple spillovers and onward transmission of SARS-Cov-2 in free-living and captive White-tailed deer (Odocoileus virginianus)
Suresh V Kuchipudi; Meera Surendran-Nair; Rachel M Ruden; Michele Yon; Ruth H Nissly; Rahul K Nelli; Lingling Li; Bhushan M Jayarao; Kurt Vandegrift; Costas D Maranas; Nicole Levine; Katriina Willgert; Andrew J.K Conlan; Randall J Olsen; James Davis; James M. Musser; Peter J Hudson; Vivek Kapur.
Afiliación
  • Suresh V Kuchipudi; Pennsylvania State University
  • Meera Surendran-Nair; Pennsylvania State University
  • Rachel M Ruden; Iowa State University
  • Michele Yon; Pennsylvania State University
  • Ruth H Nissly; Pennsylvania State University
  • Rahul K Nelli; Iowa State University
  • Lingling Li; Pennsylvania State University
  • Bhushan M Jayarao; Pennsylvania State University
  • Kurt Vandegrift; Pennsylvania State University
  • Costas D Maranas; Pennsylvania State University
  • Nicole Levine; Pennsylvania State University
  • Katriina Willgert; University of Cambridge
  • Andrew J.K Conlan; University of Cambridge
  • Randall J Olsen; Houston Methodist Research Institute and Houston Methodist Hospital
  • James Davis; Argonne National Laboratory
  • James M. Musser; Houston Methodist Hospital
  • Peter J Hudson; Pennsylvania State University University Park : Penn State
  • Vivek Kapur; Pennsylvania State University University Park : Penn State
Preprint en En | PREPRINT-BIORXIV | ID: ppbiorxiv-466677
ABSTRACT
Many animal species are susceptible to SARS-CoV-2 and could potentially act as reservoirs, yet transmission of the virus in non-human free-living animals has not been documented. White-tailed deer (Odocoileus virginianus), the predominant cervid in North America, are susceptible to SARS-CoV-2 infection, and experimentally infected fawns can transmit the virus. To test the hypothesis that SARS-CoV-2 may be circulating in deer, we tested 283 retropharyngeal lymph node (RPLN) samples collected from 151 free-living and 132 captive deer in Iowa from April 2020 through December of 2020 for the presence of SARS-CoV-2 RNA. Ninety-four of the 283 deer (33.2%; 95% CI 28, 38.9) samples were positive for SARS-CoV-2 RNA as assessed by RT-PCR. Notably, between November 23, 2020 and January 10, 2021, 80 of 97 (82.5%; 95% CI 73.7, 88.8) RPLN samples had detectable SARS-CoV-2 RNA by RT-PCR. Whole genome sequencing of the 94 positive RPLN samples identified 12 SARS-CoV-2 lineages, with B.1.2 (n = 51; 54.5%), and B.1.311 (n = 19; 20%) accounting for ~75% of all samples. The geographic distribution and nesting of clusters of deer and human lineages strongly suggest multiple zooanthroponotic spillover events and deer-to-deer transmission. The discovery of sylvatic and enzootic SARS-CoV-2 transmission in deer has important implications for the ecology and long-term persistence, as well as the potential for spillover to other animals and spillback into humans. These findings highlight an urgent need for a robust and proactive "One Health" approach to obtaining a better understanding of the ecology and evolution of SARS-CoV-2. One-Sentence SummarySARS-CoV-2 was detected in one-third of sampled white-tailed deer in Iowa between September 2020 and January of 2021 that likely resulted from multiple human-to-deer spillover and deer-to-deer transmission events.
Licencia
cc_by_nc_nd
Texto completo: 1 Colección: 09-preprints Base de datos: PREPRINT-BIORXIV Idioma: En Año: 2021 Tipo del documento: Preprint
Texto completo: 1 Colección: 09-preprints Base de datos: PREPRINT-BIORXIV Idioma: En Año: 2021 Tipo del documento: Preprint