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Haplotype-resolved genome assembly of the upas tree (Antiaris toxicaria).
Miao, Ke; Wang, Ya; Hou, Luxiao; Liu, Yan; Liu, Haiyang; Ji, Yunheng.
Afiliación
  • Miao K; CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
  • Wang Y; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, 650201, China.
  • Hou L; CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
  • Liu Y; CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
  • Liu H; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, 650201, China.
  • Ji Y; CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
Sci Data ; 11(1): 1011, 2024 Sep 18.
Article en En | MEDLINE | ID: mdl-39294147
ABSTRACT
The upas tree (Antiaris toxicaria Lesch.) is a medically important plant that contains various specialized metabolites with significant bioactivity. The lack of a reference genome hinders the in-depth study as well as rational exploitation and conservation of this plant. Here, we present the first holotype-resolved chromosome-scale genome of the upas tree. The assembled genome consisted of 26 chromosomes that contain 1.34 Gb of sequencing data with a contig N50 length of 60 Mb. Genome annotation identified 43,500 protein-coding genes in the upas tree genome, of which 98.75% were functionally annotated. This high-quality reference genome will lay the foundation for further studies on the evolution and functional genomics of the upas tree.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma de Planta Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma de Planta Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido