Insights into the molecular response of Dioithona rigida to selenium nanoparticles: de novo transcriptome assembly and differential gene expression analysis.
Sci Technol Adv Mater
; 25(1): 2379758, 2024.
Article
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| MEDLINE
| ID: mdl-39253596
ABSTRACT
The impact of contaminants on Copepod sp. and its molecular response is least explored, despite their abundance and dominance among invertebrates in aquatic environments. In the present investigation, Dioithona rigida, a cyclopoid zooplankton, was treated with selenium nanoparticles (SeNPs) to determine the associated biochemical changes, and the chronic exposure effects were recorded using transcriptomic analysis. It was found that, SeNPs were acutely toxic with a lethal dose 50% of 140.9 mg/L. The de novo assembled transcriptome of the copepod comprised 81,814 transcripts, which underwent subsequent annotations to biological processes (23,378), cellular components (21,414), and molecular functions (31,015). Comparison of the expressed transcripts against the treated sample showed that a total of 186 transcript genes were differentially expressed among the D. rigida treatments (control and SeNPs). The significant downregulated genes are coding for DNA repair, DNA-templated DNA replication, DNA integration, oxidoreductase activity and transmembrane transport. Similarly, significant upregulations were observed in protein phosphatase binding and regulation of membrane repolarization. Understanding the impact of SeNPs on copepods is crucial not only for aquatic ecosystem health but also for human health, as these organisms play a key role in marine food webs, ultimately affecting the fish consumed by humans. By elucidating the molecular responses and potential toxicological effects of SeNPs, this study provides key insights for risk assessments and regulatory policies, ensuring the safety of seafood and protecting human health from the unintended consequences of nanoparticle pollution.
The toxicity analysis in Dioithona rigida is the first of its kind as a copepod model for analysis on dietary fixation of metal toxicity at the trophic level. Since this copepod is a major zooplankton fed by fish and crustacean larvae in marine ecosystems, the toxicity analysis on this copepod will give us more insights of the trophic-level food transfer. As far as our knowledge, this is the first study that opted to construct the de novo transcriptomic pipeline for this copepod, treated with selenium nanoparticles. The effectiveness of this work may be further extrapolated to assess the effect of other metal nanoparticles in this model organism. Although the selenium toxicity in marine ecosystem is an established sector, through our combined approach of biochemical analysis and omics approach, the solid framework and comprehensive insight of the selenium toxicity in reproductive fitness and molecular changes has been studied. This study chose to seek a reliable alternative in the sense of new copepod model and omics approach to analyse the relevant metal nanoparticle toxicity in the marine ecosystem.
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1
Colección:
01-internacional
Base de datos:
MEDLINE
Idioma:
En
Revista:
Sci Technol Adv Mater
Año:
2024
Tipo del documento:
Article
País de afiliación:
India
Pais de publicación:
Estados Unidos