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Phyllosticta paracitricarpa is synonymous with the EU quarantine fungus P. citricarpa based on phylogenomic analyses.
van Ingen-Buijs, Valerie A; van Westerhoven, Anouk C; Skiadas, Petros; Zuijdgeest, Xander C L; Haridas, Sajeet; Daum, Christopher; Duffy, Kecia; Guo, Jie; Hundley, Hope; LaButti, Kurt; Lipzen, Anna; Pangilinan, Jasmyn; Riley, Robert; Wang, Jie; Yan, Mi; Martin, Francis; Barry, Kerrie; Grigoriev, Igor V; Groenewald, Johannes Z; Crous, Pedro W; Seidl, Michael F.
Afiliación
  • van Ingen-Buijs VA; Evolutionary Phytopathology group, Westerdijk Fungal Biodiversity Institute, Utrecht 3584 CT, the Netherlands; Department of Plant Sciences, Laboratory of Phytopathology, Wageningen University and Research, Wageningen 6708 PB, the Netherlands; Netherlands Institute for Vectors, Invasive plants and P
  • van Westerhoven AC; Department of Plant Sciences, Laboratory of Phytopathology, Wageningen University and Research, Wageningen 6708 PB, the Netherlands; Theoretical Biology & Bioinformatics, Utrecht University, Utrecht 3584 CH, the Netherlands.
  • Skiadas P; Theoretical Biology & Bioinformatics, Utrecht University, Utrecht 3584 CH, the Netherlands.
  • Zuijdgeest XCL; Centre for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany.
  • Haridas S; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Daum C; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Duffy K; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Guo J; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Hundley H; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • LaButti K; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Lipzen A; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Pangilinan J; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Riley R; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Wang J; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Yan M; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Martin F; Department of Biology, Institut National de la Recherche Agronomique, UMR INRA-Université de Lorraine "Interaction Arbres/Microorganismes", Champenoux F-54280, France.
  • Barry K; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Grigoriev IV; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Department of Plant and Microbial Biology, University of California Berkeley, CA 94720, USA.
  • Groenewald JZ; Evolutionary Phytopathology group, Westerdijk Fungal Biodiversity Institute, Utrecht 3584 CT, the Netherlands.
  • Crous PW; Evolutionary Phytopathology group, Westerdijk Fungal Biodiversity Institute, Utrecht 3584 CT, the Netherlands; Department of Plant Sciences, Laboratory of Phytopathology, Wageningen University and Research, Wageningen 6708 PB, the Netherlands.
  • Seidl MF; Theoretical Biology & Bioinformatics, Utrecht University, Utrecht 3584 CH, the Netherlands. Electronic address: m.f.seidl@uu.nl.
Fungal Genet Biol ; 175: 103925, 2024 Sep 05.
Article en En | MEDLINE | ID: mdl-39244012
ABSTRACT
Phyllosticta citricarpa is an important citrus-pathogen and a quarantine organism in the European Union. Its recently described relative, P. paracitricarpa, is very closely related and not listed as a quarantine organism. P. paracitricarpa is very difficult to distinguish from P. citricarpa, since its morphological features overlap and the barcoding gene sequences that were originally used to delimit them as distinct species have a low number of species-specific polymorphisms that have subsequently been shown to overlap between the two clades. Therefore, we performed extensive genomic analyses to determine whether the genetic variation between P. citricarpa and P. paracitricarpa strains should be considered to represent infraspecific variation within P. citricarpa, or whether it is indicative of distinct species. Using a phylogenomic analysis with 3,000 single copy ortholog genes and whole-genome comparisons, we determined that the variation between P. citricarpa and P. paracitricarpa can be considered as infraspecies variation within P. citricarpa. We also determined the level of variation in mitochondrial assemblies of several Phyllosticta species and concluded there are only minimal differences between the assemblies of P. citricarpa and P. paracitricarpa. Thus, using several orthogonal approaches, we here demonstrate that variation within the nuclear and mitochondrial genomes of other Phyllosticta species is larger than variation between genomes obtained from P. citricarpa and P. paracitricarpa strains. Thus, P. citricarpa and P. paracitricarpa should be considered as conspecific.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Fungal Genet Biol Asunto de la revista: GENETICA / MICROBIOLOGIA Año: 2024 Tipo del documento: Article Pais de publicación: Estados Unidos
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Fungal Genet Biol Asunto de la revista: GENETICA / MICROBIOLOGIA Año: 2024 Tipo del documento: Article Pais de publicación: Estados Unidos