Your browser doesn't support javascript.
loading
Two near-chromosomal-level genomes of globally-distributed Macroascomycete based on single-molecule fluorescence and Hi-C methods.
Liu, Wei; Shi, Xiaofei; Cai, Yingli; Sun, Wenhua; He, Peixin; Perez-Moreno, Jesus; Liu, Dong; Yu, Fuqiang.
Afiliación
  • Liu W; The Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
  • Shi X; The Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
  • Cai Y; Institute of Agro-products Processing, Yunnan Academy of Agricultural Sciences, Kunming, 650221, China.
  • Sun W; College of Food and Biological Engineering, Zhengzhou University of Light Industry, Zhengzhou, 450002, China.
  • He P; College of Food and Biological Engineering, Zhengzhou University of Light Industry, Zhengzhou, 450002, China.
  • Perez-Moreno J; Edafología, Campus Montecillo, Colegio de Postgraduados, Texcoco, 56230, Mexico.
  • Liu D; The Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China. liudongc@mail.kib.ac.cn.
  • Yu F; The Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China. fqyu@mail.kib.ac.cn.
Sci Data ; 11(1): 964, 2024 Sep 04.
Article en En | MEDLINE | ID: mdl-39231989
ABSTRACT
Discinaceae holds significant importance within the Pezizales, representing a prominent group of macroascomycetes distributed globally. However, there is a dearth of genomic studies focusing on this family, resulting in gaps in our understanding of its evolution, development, and ecology. Here we utilized state-of-the-art genome assembly methodologies, incorporating third-generation single-molecule fluorescence and Hi-C-assisted methods, to elucidate the genomic landscapes of Gyromitra esculenta and Paragyromitra xinjiangensis. The genome sizes of two species were determined to be 47.10 Mb and 48.20 Mb, with 23 and 22 scaffolds, respectively. 10,438 and 11,469 coding proteins were identified, with functional annotations encompassing over 96.47% and 94.40%, respectively. Assessment of completeness using BUSCO revealed that 98.71% and 98.89% of the conserved proteins were identified. The application of comparative genomic technology has helped in identifying traits associated with of heterothallic life cycle traits and elucidating unique patterns of chromosomal evolution. Additionally, we identified potential saprotrophic nutritional modes and systematic phylogenetic relationships between the two species. Therefore, this study provides crucial genomic insights into the evolution, nutritional type, and ecological roles of species within the Pezizales.
Asunto(s)
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Ascomicetos / Genoma Fúngico Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Ascomicetos / Genoma Fúngico Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido