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PPGV: a comprehensive database of peach population genome variation.
An, Yanlin; Ban, Qiuyan; Liu, Li; Zhang, Feng; Yu, Shirui; Jing, Tingting; Zhao, Shiqi.
Afiliación
  • An Y; Department of Food Science and Engineering, Moutai Institute, Renhuai, China.
  • Ban Q; College of Horticulture, Henan Agricultural University, Zhengzhou, China.
  • Liu L; Department of Food Science and Engineering, Moutai Institute, Renhuai, China.
  • Zhang F; Department of Food Science and Engineering, Moutai Institute, Renhuai, China.
  • Yu S; Department of Food Science and Engineering, Moutai Institute, Renhuai, China.
  • Jing T; State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China. jtt0127@163.com.
  • Zhao S; School of Fishery, Zhejiang Ocean University, Zhoushan, Zhejiang, 316022, China. zhaosq@zjou.edu.cn.
BMC Plant Biol ; 24(1): 701, 2024 Jul 24.
Article en En | MEDLINE | ID: mdl-39048957
ABSTRACT
Peach tree is one of the most important fruit trees in the world, and it has been cultivated for more than 7,500 years. In recent years, the genome and population resequencing of peach trees have been published continuously, which has effectively promoted the research of peach tree genetics and breeding. In order to promote the further mining and utilization of these data, we integrated and constructed a comprehensive peach genome and variation database (PPGV, http//peachtree.work/home ). The PPGV contains 10 sets of published peach tree genome data, as well as genomic variation information for 1,378 peach tree samples (the resequencing data of 1,378 samples were aligned with the high-quality genomes of Lovell, CN14 and Chinesecling, respectively, for mutation detection). A variety of useful and flexible tools, such as BLAST, Gene ID Convert, KEGG/GO Enrichment, Primer Design and Gene function, were also specially designed for searching data and assisting in breeding.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Variación Genética / Genoma de Planta / Bases de Datos Genéticas / Prunus persica Idioma: En Revista: BMC Plant Biol Asunto de la revista: BOTANICA Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido
Texto completo
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Variación Genética / Genoma de Planta / Bases de Datos Genéticas / Prunus persica Idioma: En Revista: BMC Plant Biol Asunto de la revista: BOTANICA Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido