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Introduction and impact of routine whole genome sequencing in the diagnosis and management of sarcoma.
Watkins, James A; Trotman, Jamie; Tadross, John A; Harrington, Jennifer; Hatcher, Helen; Horan, Gail; Prewett, Sarah; Wong, Han H; McDonald, Sarah; Tarpey, Patrick; Roberts, Thomas; Su, Jing; Tischkowitz, Marc; Armstrong, Ruth; Amary, Fernanda; Sosinsky, Alona.
Afiliación
  • Watkins JA; East Genomics Laboratory Hub, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK. james.watkins4@nhs.net.
  • Trotman J; Department of Histopathology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK. james.watkins4@nhs.net.
  • Tadross JA; East Genomics Laboratory Hub, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
  • Harrington J; East Genomics Laboratory Hub, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
  • Hatcher H; Department of Histopathology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
  • Horan G; MRC Metabolic Diseases Unit, Wellcome Trust-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge, UK.
  • Prewett S; Department of Oncology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
  • Wong HH; Department of Oncology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
  • McDonald S; Department of Oncology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
  • Tarpey P; Department of Oncology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
  • Roberts T; Department of Oncology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
  • Su J; Department of Histopathology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
  • Tischkowitz M; East Genomics Laboratory Hub, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
  • Armstrong R; East Genomics Laboratory Hub, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
  • Amary F; East Genomics Laboratory Hub, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
  • Sosinsky A; Department of Medical Genetics, National Institute for Health Research Cambridge Biomedical Research Centre, University of Cambridge, Cambridge, UK.
Br J Cancer ; 131(5): 860-869, 2024 Sep.
Article en En | MEDLINE | ID: mdl-38997407
ABSTRACT

BACKGROUND:

Sarcomas are diverse neoplasms with highly variable histological appearances in which diagnosis is often challenging and management options for metastatic/unresectable disease limited. Many sarcomas have distinctive molecular alterations, but the range of alterations is large, variable in type and rapidly increasing, meaning that testing by limited panels is unable to capture the broad spectrum of clinically pertinent genomic drivers required. Paired whole genome sequencing (WGS) in contrast allows comprehensive assessment of small variants, copy number and structural variants along with mutational signature analysis and germline testing.

METHODS:

Introduction of WGS as a diagnostic standard for all eligible patients with known or suspected soft tissue sarcoma over a 2-year period at a soft tissue sarcoma treatment centre.

RESULTS:

WGS resulted in a refinement in the diagnosis in 37% of cases, identification of a target for personalised therapy in 33% of cases, and a germline alteration in 4% of cases.

CONCLUSION:

Introduction of WGS poses logistical and training challenges, but offers significant benefits to this group of patients.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Sarcoma / Secuenciación Completa del Genoma Límite: Adolescent / Adult / Aged / Aged80 / Female / Humans / Male / Middle aged Idioma: En Revista: Br J Cancer Año: 2024 Tipo del documento: Article País de afiliación: Reino Unido Pais de publicación: Reino Unido

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Sarcoma / Secuenciación Completa del Genoma Límite: Adolescent / Adult / Aged / Aged80 / Female / Humans / Male / Middle aged Idioma: En Revista: Br J Cancer Año: 2024 Tipo del documento: Article País de afiliación: Reino Unido Pais de publicación: Reino Unido