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Interactive data exploration websites for large-scale electrophysiology.
Birman, Daniel; Chapuis, Gaelle; Faulkner, Mayo; Rossant, Cyrille; Benson, Julius; Catarino, Joana A; Churchland, Anne K; Hu, Fei; Huntenburg, Julia M; Khanal, Anup; Krasniak, Christopher; Lau, Petrina Y P; Meijer, Guido T; Miska, Nathaniel J; Noel, Jean-Paul; Pan-Vazquez, Alejandro; Roth, Noam; Schartner, Michael; Socha, Karolina Z; Steinmetz, Nicholas A; Urai, Anne E; Wells, Miles J; West, Steven J; Winter, Olivier.
Afiliación
  • Birman D; University of Washington, USA.
  • Chapuis G; University of Geneva, Switzerland.
  • Faulkner M; University College London, UK.
  • Rossant C; University College London, UK.
  • Benson J; New York University, USA.
  • Catarino JA; Champalimaud Foundation, Portugal.
  • Churchland AK; University of California Los Angeles, USA.
  • Hu F; University of California Berkeley, USA.
  • Huntenburg JM; Max Planck Institute, Germany.
  • Khanal A; University of California Los Angeles, USA.
  • Krasniak C; Cold Spring Harbor Laboratory, USA.
  • Lau PYP; New York University, USA.
  • Meijer GT; Champalimaud Foundation, Portugal.
  • Miska NJ; Sainsbury Wellcome Center, UK.
  • Noel JP; New York University, USA.
  • Pan-Vazquez A; Princeton University, USA.
  • Roth N; University of Washington, USA.
  • Schartner M; Champalimaud Foundation, Portugal.
  • Socha KZ; University College London, UK.
  • Steinmetz NA; University of Washington, USA.
  • Urai AE; Leiden University, The Netherlands.
  • Wells MJ; University College London, UK.
  • West SJ; University College London, UK.
  • Winter O; Champalimaud Foundation, Portugal.
bioRxiv ; 2024 Jun 14.
Article en En | MEDLINE | ID: mdl-38915704
ABSTRACT
Methodological advances in neuroscience have enabled the collection of massive datasets which demand innovative approaches for scientific communication. Existing platforms for data storage lack intuitive tools for data exploration, limiting our ability to interact effectively with these brain-wide datasets. We introduce two public websites (Data and Atlas) developed for the International Brain Laboratory which provide access to millions of behavioral trials and hundreds of thousands of individual neurons. These interfaces allow users to discover both the raw and processed brain-wide data released by the IBL at the scale of the whole brain, individual sessions, trials, and neurons. By hosting these data interfaces as websites they are available cross-platform with no installation. By releasing each site's code as a modular open-source framework, other researchers can easily develop their own web interfaces and explore their own data. As neuroscience datasets continue to expand, customizable web interfaces offer a glimpse into a future of streamlined data exploration and act as blueprints for future tools.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: BioRxiv Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Estados Unidos
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: BioRxiv Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Estados Unidos