An exploratory in silico analysis of bacteriocin gene clusters in the urobiome.
Microbiome Res Rep
; 3(2): 24, 2024.
Article
en En
| MEDLINE
| ID: mdl-38846023
ABSTRACT
Background:
The role of the urobiome in health and disease remains an understudied area compared to the rest of the human microbiome. Enhanced culturing techniques and next-generation sequencing technologies have identified the urobiome as an untapped source of potentially novel antimicrobials. The aim of this study was to screen the urobiome for genes encoding bacteriocin production.Methods:
The genomes of 181 bacterial urobiome isolates were screened in silico for the presence of bacteriocin gene clusters using the bacteriocin mining tool BAGEL4 and secondary metabolite screening tool antiSMASH7.Results:
From these isolates, an initial 263 areas of interest were identified, manually annotated, and evaluated for potential bacteriocin gene clusters. This resulted in 32 isolates containing 80 potential bacteriocin gene clusters, of which 72% were identified as class II, 13.75% as class III, 8.75% as class I, and 5% as unclassified bacteriocins.Conclusion:
Overall, 53 novel variants were discovered, including nisin, gassericin, ubericin, and colicins.
Texto completo:
1
Colección:
01-internacional
Base de datos:
MEDLINE
Idioma:
En
Revista:
Microbiome Res Rep
Año:
2024
Tipo del documento:
Article
País de afiliación:
Irlanda
Pais de publicación:
Estados Unidos