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Perspectives on tracking data reuse across biodata resources.
Ross, Karen E; Bastian, Frederic B; Buys, Matt; Cook, Charles E; D'Eustachio, Peter; Harrison, Melissa; Hermjakob, Henning; Li, Donghui; Lord, Phillip; Natale, Darren A; Peters, Bjoern; Sternberg, Paul W; Su, Andrew I; Thakur, Matthew; Thomas, Paul D; Bateman, Alex.
Afiliación
  • Ross KE; Protein Information Resource, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC 20007, United States.
  • Bastian FB; Evolutionary Bioinformatics Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
  • Buys M; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.
  • Cook CE; DataCite, 30167 Hannover, Germany.
  • D'Eustachio P; Global Biodata Coalition, Strasbourg 67080, France.
  • Harrison M; Department of Biochemistry & Molecular Pharmacology, NYU Grossman School of Medicine, New York, NY 10012, United States.
  • Hermjakob H; Literature Services, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, United Kingdom.
  • Li D; Molecular Systems, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, United Kingdom.
  • Lord P; Chan Zuckerberg Initiative, Redwood City, CA 94063, United States.
  • Natale DA; School of Computing, Newcastle University, Newcastle upon Tyne NE4 5TG, United Kingdom.
  • Peters B; Protein Information Resource, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC 20007, United States.
  • Sternberg PW; Center for Vaccine Innovation, La Jolla Institute of Immunology, La Jolla, CA 92037, United States.
  • Su AI; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, United States.
  • Thakur M; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, United States.
  • Thomas PD; Data Services, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom.
  • Bateman A; Department of Population and Public Health Sciences, University of Southern California, Los Angeles, CA 90089, United States.
Bioinform Adv ; 4(1): vbae057, 2024.
Article en En | MEDLINE | ID: mdl-38721398
ABSTRACT
Motivation Data reuse is a common and vital practice in molecular biology and enables the knowledge gathered over recent decades to drive discovery and innovation in the life sciences. Much of this knowledge has been collated into molecular biology databases, such as UniProtKB, and these resources derive enormous value from sharing data among themselves. However, quantifying and documenting this kind of data reuse remains a challenge.

Results:

The article reports on a one-day virtual workshop hosted by the UniProt Consortium in March 2023, attended by representatives from biodata resources, experts in data management, and NIH program managers. Workshop discussions focused on strategies for tracking data reuse, best practices for reusing data, and the challenges associated with data reuse and tracking. Surveys and discussions showed that data reuse is widespread, but critical information for reproducibility is sometimes lacking. Challenges include costs of tracking data reuse, tensions between tracking data and open sharing, restrictive licenses, and difficulties in tracking commercial data use. Recommendations that emerged from the discussion include development of standardized formats for documenting data reuse, education about the obstacles posed by restrictive licenses, and continued recognition by funding agencies that data management is a critical activity that requires dedicated resources. Availability and implementation Summaries of survey results are available at https//docs.google.com/forms/d/1j-VU2ifEKb9C-sW6l3ATB79dgHdRk5v_lESv2hawnso/viewanalytics (survey of data providers) and https//docs.google.com/forms/d/18WbJFutUd7qiZoEzbOytFYXSfWFT61hVce0vjvIwIjk/viewanalytics (survey of users).
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Bioinform Adv Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Reino Unido
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Bioinform Adv Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Reino Unido