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The phased Solanum okadae genome and Petota pangenome analysis of 23 other potato wild relatives and hybrids.
Achakkagari, S R; Bozan, I; Camargo-Tavares, J C; McCoy, H J; Portal, L; Soto, J; Bizimungu, B; Anglin, N L; Manrique-Carpintero, N; Lindqvist-Kreuze, H; Tai, H H; Strömvik, M V.
Afiliación
  • Achakkagari SR; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada.
  • Bozan I; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada.
  • Camargo-Tavares JC; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada.
  • McCoy HJ; Department of Chemistry, University of New Brunswick, Fredericton, NB, Canada.
  • Portal L; International Potato Center (CIP), Lima, Peru.
  • Soto J; International Potato Center (CIP), Lima, Peru.
  • Bizimungu B; Agriculture and Agri-Food Canada Fredericton Research and Development Centre, Fredericton, NB, Canada.
  • Anglin NL; International Potato Center (CIP), Lima, Peru.
  • Manrique-Carpintero N; USDA ARS Small Grains and Potato Germplasm Research, Aberdeen, ID, USA.
  • Lindqvist-Kreuze H; International Potato Center (CIP), Lima, Peru.
  • Tai HH; Alliance of Bioversity International and International Center for Tropical Agriculture (CIAT), Cali, Colombia.
  • Strömvik MV; International Potato Center (CIP), Lima, Peru.
Sci Data ; 11(1): 454, 2024 May 04.
Article en En | MEDLINE | ID: mdl-38704417
ABSTRACT
Potato is an important crop in the genus Solanum section Petota. Potatoes are susceptible to multiple abiotic and biotic stresses and have undergone constant improvement through breeding programs worldwide. Introgression of wild relatives from section Petota with potato is used as a strategy to enhance the diversity of potato germplasm. The current dataset contributes a phased genome assembly for diploid S. okadae, and short read sequences and de novo assemblies for the genomes of 16 additional wild diploid species in section Petota that were noted for stress resistance and were of interest to potato breeders. Genome sequence data for three additional genomes representing polyploid hybrids with cultivated potato, and an additional genome from non-tuberizing S. etuberosum, which is outside of section Petota, were also included. High quality short reads assemblies were achieved with genome sizes ranging from 575 to 795 Mbp and annotations were performed utilizing transcriptome sequence data. Genomes were compared for presence/absence of genes and phylogenetic analyses were carried out using plastome and nuclear sequences.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Filogenia / Genoma de Planta / Solanum Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: Canadá Pais de publicación: Reino Unido
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Filogenia / Genoma de Planta / Solanum Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: Canadá Pais de publicación: Reino Unido