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A chromosome-level genome for the flower thrips Frankliniella intonsa.
Song, Wei; Wang, Jia-Xu; Cao, Li-Jun; Chen, Jin-Cui; Bao, Wen-Xue; Chen, Min; Wei, Shu-Jun.
Afiliación
  • Song W; Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
  • Wang JX; Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
  • Cao LJ; Beijing Key Laboratory for Forest Pests Control, Beijing Forestry University, Beijing, 100083, China.
  • Chen JC; Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
  • Bao WX; Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
  • Chen M; College of Forestry, Inner Mongolia Agricultural University, Hohhot, 010019, China.
  • Wei SJ; Beijing Key Laboratory for Forest Pests Control, Beijing Forestry University, Beijing, 100083, China.
Sci Data ; 11(1): 280, 2024 Mar 08.
Article en En | MEDLINE | ID: mdl-38459039
ABSTRACT
The flower thrips Frankliniella intonsa (Thysanoptera Thripidae) is a common insect found in flowers of many plants. Sometimes, F. intonsa causes damage to crops through direct feeding and transmission of plant viruses. Here, we assembled a chromosomal level genome of F. intonsa using the Illumina, Oxford Nanopore (ONT), and Hi-C technologies. The assembled genome had a size of 209.09 Mb, with a contig N50 of 997 bp, scaffold N50 of 13.415 Mb, and BUSCO completeness of 92.5%. The assembled contigs were anchored on 15 chromosomes. A set of 14,109 protein-coding genes were annotated in the genome with a BUSCO completeness of 95.0%. The genome contained 491 non-coding RNA and 0.57% of interspersed repeats. This high-quality genome provides a valuable resource for understanding the ecology, genetics, and evolution of F. intonsa, as well as for controlling thrips pests.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma de los Insectos / Thysanoptera Límite: Animals Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma de los Insectos / Thysanoptera Límite: Animals Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido