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De novo Phased Genome Assembly, Annotation and Population Genotyping of Alectoris Chukar.
Zhou, Hao; Huang, Xunhe; Liu, Jiajia; Ding, Jinmei; Xu, Ke; Zhu, Wenqi; He, Chuan; Yang, Lingyu; Zhu, Jianshen; Han, Chengxiao; Qin, Chao; Luo, Huaixi; Chen, Kangchun; Jiang, Shengyao; Shi, Yurou; Zeng, Jinyuan; Weng, Zhuoxian; Xu, Yongjie; Wang, Qing; Zhong, Ming; Du, Bingwang; Song, Sen; Meng, He.
Afiliación
  • Zhou H; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • Huang X; Jiaying University/Guangdong Provincial Key Laboratory of Conservation and Precision Utilization of Characteristic Agricultural Resources in Mountainous Areas, Meizhou, 514015, China.
  • Liu J; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • Ding J; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • Xu K; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • Zhu W; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • He C; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • Yang L; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • Zhu J; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • Han C; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • Qin C; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • Luo H; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • Chen K; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • Jiang S; Shanghai Collaborative Innovation Center of Agri-Seeds/School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
  • Shi Y; School of Life Sciences, Lanzhou University, Lanzhou, 730000, China.
  • Zeng J; School of Life Sciences, Lanzhou University, Lanzhou, 730000, China.
  • Weng Z; Jiaying University/Guangdong Provincial Key Laboratory of Conservation and Precision Utilization of Characteristic Agricultural Resources in Mountainous Areas, Meizhou, 514015, China.
  • Xu Y; Jiaying University/Guangdong Provincial Key Laboratory of Conservation and Precision Utilization of Characteristic Agricultural Resources in Mountainous Areas, Meizhou, 514015, China.
  • Wang Q; Jiaying University/Guangdong Provincial Key Laboratory of Conservation and Precision Utilization of Characteristic Agricultural Resources in Mountainous Areas, Meizhou, 514015, China.
  • Zhong M; Jiaying University/Guangdong Provincial Key Laboratory of Conservation and Precision Utilization of Characteristic Agricultural Resources in Mountainous Areas, Meizhou, 514015, China.
  • Du B; Jiaying University/Guangdong Provincial Key Laboratory of Conservation and Precision Utilization of Characteristic Agricultural Resources in Mountainous Areas, Meizhou, 514015, China. dubw@gdou.edu.cn.
  • Song S; Department of Animal Science, Guangdong Ocean University, Huguangyan East, Zhanjiang, Guangdong, 524088, China. dubw@gdou.edu.cn.
  • Meng H; School of Life Sciences, Lanzhou University, Lanzhou, 730000, China. songsen@lzu.edu.cn.
Sci Data ; 11(1): 162, 2024 Feb 02.
Article en En | MEDLINE | ID: mdl-38307880
ABSTRACT
The Alectoris Chukar (chukar) is the most geographically widespread partridge species in the world, demonstrating exceptional adaptability to diverse ecological environments. However, the scarcity of genetic resources for chukar has hindered research into its adaptive evolution and molecular breeding. In this study, we have sequenced and assembled a high-quality, phased chukar genome that consists of 31 pairs of relatively complete diploid chromosomes. Our BUSCO analysis reported a high completeness score of 96.8% and 96.5%, with respect to universal single-copy orthologs and a low duplication rate (0.3% and 0.5%) for two assemblies. Through resequencing and population genomic analyses of six subspecies, we have curated invaluable genotype data that underscores the adaptive evolution of chukar in response to both arid and high-altitude environments. These data will significantly contribute to research on how chukars adaptively evolve to cope with desertification and alpine climates.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma / Galliformes Límite: Animals Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma / Galliformes Límite: Animals Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido