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Near telomere-to-telomere genome of the model plant Physcomitrium patens.
Bi, Guiqi; Zhao, Shijun; Yao, Jiawei; Wang, Huan; Zhao, Mengkai; Sun, Yuanyuan; Hou, Xueren; Haas, Fabian B; Varshney, Deepti; Prigge, Michael; Rensing, Stefan A; Jiao, Yuling; Ma, Yingxin; Yan, Jianbin; Dai, Junbiao.
Afiliación
  • Bi G; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
  • Zhao S; CAS Key Laboratory of Quantitative Engineering Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics and Shenzhen Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
  • Yao J; University of Chinese Academy of Sciences, Beijing, China.
  • Wang H; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
  • Zhao M; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
  • Sun Y; Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China.
  • Hou X; College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China.
  • Haas FB; University of Chinese Academy of Sciences, Beijing, China.
  • Varshney D; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.
  • Prigge M; University of Chinese Academy of Sciences, Beijing, China.
  • Rensing SA; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.
  • Jiao Y; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany.
  • Ma Y; Faculty of Chemistry and Pharmacy, University of Freiburg, Freiburg, Germany.
  • Yan J; Department of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA, USA.
  • Dai J; Faculty of Chemistry and Pharmacy, University of Freiburg, Freiburg, Germany.
Nat Plants ; 10(2): 327-343, 2024 02.
Article en En | MEDLINE | ID: mdl-38278953
ABSTRACT
The model plant Physcomitrium patens has played a pivotal role in enhancing our comprehension of plant evolution and development. However, the current genome harbours numerous regions that remain unfinished and erroneous. To address these issues, we generated an assembly using Oxford Nanopore reads and Hi-C mapping. The assembly incorporates telomeric and centromeric regions, thereby establishing it as a near telomere-to-telomere genome except a region in chromosome 1 that is not fully assembled due to its highly repetitive nature. This near telomere-to-telomere genome resolves the chromosome number at 26 and provides a gap-free genome assembly as well as updated gene models to aid future studies using this model organism.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Centrómero / Telómero Idioma: En Revista: Nat Plants Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido
Texto completo
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Centrómero / Telómero Idioma: En Revista: Nat Plants Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido