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Chromosome-level genome assembly of Hippophae gyantsensis.
Chen, Mingyue; Yang, Danni; Yang, Shihai; Yang, Xingyu; Chen, Zhiyu; Yang, Tianyu; Yang, Yunqiang; Yang, Yongping.
Afiliación
  • Chen M; School of Ecology and Environmental Science, Yunnan University, Kunming, China.
  • Yang D; Plant Germplasm and Genomics Center, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
  • Yang S; Institute of Tibetan Plateau Research at Kunming, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
  • Yang X; Plant Germplasm and Genomics Center, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
  • Chen Z; Institute of Tibetan Plateau Research at Kunming, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
  • Yang T; Plant Germplasm and Genomics Center, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
  • Yang Y; Tibet Yunwang Industrial Corporation, Ltd., Shigatse, China.
  • Yang Y; Plant Germplasm and Genomics Center, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
Sci Data ; 11(1): 126, 2024 Jan 25.
Article en En | MEDLINE | ID: mdl-38272931
ABSTRACT
Hippophae gyantsensis, which is a native tree species in China, is ideal for windbreak and sand-fixing forests. It is an economically and ecologically valuable tree species distributed exclusively in the Qinghai-Tibet Plateau in China. In our study, we assembled a chromosome-level genome of H. gyantsensis using Illumina sequencing, Nanopore sequencing and chromosome structure capture technique. The genome was 716.32 Mb in size with scaffold N50 length of 64.84 Mb. A total of 716.25 Mb genome data was anchored and orientated onto 12 chromosomes with a mounting rate of up to 99.99%. Additionally, the genome was found to comprise approximately 56.84% repeat sequences, of which long terminal repeats(LTRs) that accounted for 33.19% of the entire genome. Meanwhile, a total of 32,316 protein-coding genes were predicted, and 91.07% of these genes were functionally annotated. We also completed a series of comparative genomic analyses to provide researchers with useful reference material for future studies on seabuckthorn.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma de Planta / Hippophae País/Región como asunto: Asia Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma de Planta / Hippophae País/Región como asunto: Asia Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido