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Altered transcriptomes, cell type proportions, and dendritic spine morphology in hippocampus of suicide deaths.
Das, Sujan C; Schulmann, Anton; Callor, William B; Jerominski, Leslie; Panicker, Mitradas M; Christensen, Erik D; Bunney, William E; Williams, Megan E; Coon, Hilary; Vawter, Marquis P.
Afiliación
  • Das SC; Functional Genomics Laboratory, Department of Psychiatry & Human Behavior, University of California, Irvine, CA, USA.
  • Schulmann A; Human Genetics Branch, NIMH-IRP.
  • Callor WB; Utah State Office of Medical Examiner, Utah Department of Health, Salt Lake City, UT, USA.
  • Jerominski L; Department of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
  • Panicker MM; Department of Physiology and Biophysics, School of Medicine, University of California, Irvine, USA.
  • Christensen ED; Utah State Office of Medical Examiner, Utah Department of Health, Salt Lake City, UT, USA.
  • Bunney WE; Department of Psychiatry & Human Behavior, University of California, Irvine, CA, USA.
  • Williams ME; Department of Neurobiology and Anatomy, University of Utah School of Medicine, UT, USA.
  • Coon H; Department of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
  • Vawter MP; Functional Genomics Laboratory, Department of Psychiatry & Human Behavior, University of California, Irvine, CA, USA.
medRxiv ; 2023 Jan 30.
Article en En | MEDLINE | ID: mdl-36778310
Suicide is a condition resulting from complex environmental and genetic risks that affect millions of people globally. Both structural and functional studies identified the hippocampus as one of the vulnerable brain regions contributing to suicide risk. Here, we have identified the hippocampal transcriptomes, gene ontology, cell type proportions, dendritic spine morphology, and transcriptomic signature in iPSC-derived neuronal precursor cells (NPCs) and neurons in postmortem brain tissue from suicide deaths. The hippocampal tissue transcriptomic data revealed that NPAS4 gene expression was downregulated while ALDH1A2, NAAA, and MLXIPL gene expressions were upregulated in tissue from suicide deaths. The gene ontology identified 29 significant pathways including NPAS4-associated gene ontology terms "excitatory post-synaptic potential", "regulation of postsynaptic membrane potential" and "long-term memory" indicating alteration of glutamatergic synapses in the hippocampus of suicide deaths. The cell type deconvolution identified decreased excitatory neuron proportion and an increased inhibitory neuron proportion providing evidence of excitation/inhibition imbalance in the hippocampus of suicide deaths. In addition, suicide deaths had increased dendric spine density, due to an increase of thin (relatively unstable) dendritic spines, compared to controls. The transcriptomes of iPSC-derived hippocampal-like NPCs and neurons revealed 31 and 33 differentially expressed genes in NPC and neurons, respectively, of suicide deaths. The suicide-associated differentially expressed genes in NPCs were RELN, CRH, EMX2, OXTR, PARM1 and IFITM2 which overlapped with previously published results. The previously-known suicide-associated differentially expressed genes in differentiated neurons were COL1A1, THBS1, IFITM2, AQP1, and NLRP2. Together, these findings would help better understand the hippocampal neurobiology of suicide for identifying therapeutic targets to prevent suicide.

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Tipo de estudio: Prognostic_studies Idioma: En Revista: MedRxiv Año: 2023 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Tipo de estudio: Prognostic_studies Idioma: En Revista: MedRxiv Año: 2023 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Estados Unidos