Your browser doesn't support javascript.
loading
Circulating Cell-Free RNA in Blood as a Host Response Biomarker for the Detection of Tuberculosis.
Chang, Adrienne; Loy, Conor J; Lenz, Joan S; Steadman, Amy; Andama, Alfred; Nhung, Nguyen Viet; Yu, Charles; Worodria, William; Denkinger, Claudia M; Nahid, Payam; Cattamanchi, Adithya; De Vlaminck, Iwijn.
Afiliación
  • Chang A; Meinig School of Biomedical Engineering, Cornell University; Ithaca, NY, USA.
  • Loy CJ; Meinig School of Biomedical Engineering, Cornell University; Ithaca, NY, USA.
  • Lenz JS; Meinig School of Biomedical Engineering, Cornell University; Ithaca, NY, USA.
  • Steadman A; Global Health Labs, Inc.; Bellevue, WA.
  • Andama A; Walimu; Kampala, Uganda.
  • Nhung NV; National Lung Hospital; Hanoi, Vietnam.
  • Yu C; De La Salle Medical and Health Sciences Institute; Dasmarinas, Philippines.
  • Worodria W; Walimu; Kampala, Uganda.
  • Denkinger CM; University Hospital Heidelberg & German Center of Infection Research; Heidelberg, Germany.
  • Nahid P; UCSF Center for Tuberculosis, University of California San Francisco; San Francisco, CA, USA.
  • Cattamanchi A; UCSF Center for Tuberculosis, University of California San Francisco; San Francisco, CA, USA.
  • De Vlaminck I; Division of Pulmonary and Critical Care Medicine, University of California Irvine; Orange, CA, USA.
medRxiv ; 2023 Jan 11.
Article en En | MEDLINE | ID: mdl-36711999
Tuberculosis (TB) remains a leading cause of death from an infectious disease worldwide. This is partly due to a lack of tools to effectively screen and triage individuals with potential TB. Whole blood RNA signatures have been extensively studied as potential biomarkers for TB, but they have failed to meet the World Health Organization's (WHOs) target product profiles (TPPs) for a non-sputum triage or diagnostic test. In this study, we investigated the utility of plasma cell-free RNA (cfRNA) as a host response biomarker for TB. We used RNA profiling by sequencing to analyze plasma samples from 182 individuals with a cough lasting at least two weeks, who were seen at outpatient clinics in Uganda, Vietnam, and the Philippines. Of these individuals, 100 were diagnosed with microbiologically-confirmed TB. Our analysis of the plasma cfRNA transcriptome revealed 541 differentially abundant genes, the top 150 of which were used to train 15 machine learning models. The highest performing model led to a 9-gene signature that had a diagnostic accuracy of 89.1% (95% CI: 83.6-93.4%) and an area under the curve of 0.934 (95% CI: 0.8674-1) for microbiologically-confirmed TB. This 9-gene signature exceeds the optimal WHO TPPs for a TB triage test (sensitivity: 96.2% [95% CI: 80.9-100%], specificity: 89.7% [95% CI: 72.4-100%]) and was robust to differences in sample collection, geographic location, and HIV status. Overall, our results demonstrate the utility of plasma cfRNA for the detection of TB and suggest the potential for a point-of-care, gene expression-based assay to aid in early detection of TB.

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Tipo de estudio: Diagnostic_studies / Prognostic_studies / Screening_studies Idioma: En Revista: MedRxiv Año: 2023 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Tipo de estudio: Diagnostic_studies / Prognostic_studies / Screening_studies Idioma: En Revista: MedRxiv Año: 2023 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Estados Unidos