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A genome-wide comparative evolutionary analysis of zinc finger-BED transcription factor genes in land plants.
Hussain, Athar; Liu, Jinbao; Mohan, Binoop; Burhan, Akif; Nasim, Zunaira; Bano, Raveena; Ameen, Ayesha; Zaynab, Madiha; Mukhtar, M Shahid; Pajerowska-Mukhtar, Karolina M.
Afiliación
  • Hussain A; Genomics Lab, School of Food and Agricultural Sciences (SFAS), University of Management and Technology (UMT), Lahore, 54770, Pakistan.
  • Liu J; Department of Biology, University of Alabama at Birmingham, 1300 University Blvd, Birmingham, AL, 35294, USA.
  • Mohan B; Department of Biology, University of Alabama at Birmingham, 1300 University Blvd, Birmingham, AL, 35294, USA.
  • Burhan A; Department of Life Science, University of Management and Technology (UMT), Lahore, 54770, Pakistan.
  • Nasim Z; Department of Life Science, University of Management and Technology (UMT), Lahore, 54770, Pakistan.
  • Bano R; Department of Life Science, University of Management and Technology (UMT), Lahore, 54770, Pakistan.
  • Ameen A; Office of Research Innovation and Commercialization, University of Management and Technology, Lahore, 54770, Pakistan.
  • Zaynab M; Shenzhen Key Laboratory of Marine Bioresource and Eco-Environmental Sciences, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 51807, Guangdong, China.
  • Mukhtar MS; Department of Biology, University of Alabama at Birmingham, 1300 University Blvd, Birmingham, AL, 35294, USA. smukhtar@uab.edu.
  • Pajerowska-Mukhtar KM; Department of Biology, University of Alabama at Birmingham, 1300 University Blvd, Birmingham, AL, 35294, USA. kmukhtar@uab.edu.
Sci Rep ; 12(1): 12328, 2022 07 19.
Article en En | MEDLINE | ID: mdl-35853967
Zinc finger (Zf)-BED proteins are a novel superfamily of transcription factors that controls numerous activities in plants including growth, development, and cellular responses to biotic and abiotic stresses. Despite their important roles in gene regulation, little is known about the specific functions of Zf-BEDs in land plants. The current study identified a total of 750 Zf-BED-encoding genes in 35 land plant species including mosses, bryophytes, lycophytes, gymnosperms, and angiosperms. The gene family size was somewhat proportional to genome size. All identified genes were categorized into 22 classes based on their specific domain architectures. Of these, class I (Zf-BED_DUF-domain_Dimer_Tnp_hAT) was the most common in the majority of the land plants. However, some classes were family-specific, while the others were species-specific, demonstrating diversity at different classification levels. In addition, several novel functional domains were also predicated including WRKY and nucleotide-binding site (NBS). Comparative genomics, transcriptomics, and proteomics provided insights into the evolutionary history, duplication, divergence, gene gain and loss, species relationship, expression profiling, and structural diversity of Zf-BEDs in land plants. The comprehensive study of Zf-BEDs in Gossypium sp., (cotton) also demonstrated a clear footprint of polyploidization. Overall, this comprehensive evolutionary study of Zf-BEDs in land plants highlighted significant diversity among plant species.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Proteínas de Plantas / Embryophyta Tipo de estudio: Prognostic_studies Idioma: En Revista: Sci Rep Año: 2022 Tipo del documento: Article País de afiliación: Pakistán Pais de publicación: Reino Unido
Texto completo
Añadir a Mi BVS
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XML
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Proteínas de Plantas / Embryophyta Tipo de estudio: Prognostic_studies Idioma: En Revista: Sci Rep Año: 2022 Tipo del documento: Article País de afiliación: Pakistán Pais de publicación: Reino Unido