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Genetic, haplotype and phylogenetic analysis of Ligula intestinalis by using mt-CO1 gene marker: ecological implications, climate change and eco-genetic diversity.
Selcuk, M A; Celik, F; Simsek, S; Ahmed, H; Kesik, H K; Kilinc, S Gunyakti; Cao, J.
Afiliación
  • Selcuk MA; Siirt University, Faculty of Veterinary Medicine, Department of Parasitology, Siirt, Turkey.
  • Celik F; University of Firat, Faculty of Veterinary Medicine, Department of Parasitology, Elazig, Turkey.
  • Simsek S; University of Firat, Faculty of Veterinary Medicine, Department of Parasitology, Elazig, Turkey.
  • Ahmed H; University of Firat, Faculty of Veterinary Medicine, Department of Parasitology, Elazig, Turkey.
  • Kesik HK; Department of Biosciences, COMSATS University Islamabad (CUI), Islamabad, Pakistan.
  • Kilinc SG; Bingol University, Faculty of Veterinary Medicine, Department of Parasitology, Bingol, Turkey.
  • Cao J; Bingol University, Faculty of Veterinary Medicine, Department of Parasitology, Bingol, Turkey.
Braz J Biol ; 84: e258626, 2022.
Article en En | MEDLINE | ID: mdl-35703625
Ligula intestinalis is a cestode parasite that affects freshwater fish in different countries of the world. The current study aims to reveal the phylogenetic, genetic and haplotype diversity of mt-CO1 gene sequences sent to the NCBI database from different countries by using in-silico analysis. The 105 mt-CO1 (371 bp) gene sequences of L. intestinalis obtained from NCBI were used for bioinformatics analyses. Sequences were subjected to phylogenetic and haplotype analysis. As a result of the haplotype analysis of L. intestinalis, 38 haplotypes were obtained from 13 different countries. Hap24 constituted 44.76% of the obtained haplotype network. Changes in nucleotides between haplotypes occurred at 1-84 different points. China and Turkey have highest fixation index (Fst) values of 0.59761, while the lowest (-0.10526) was found between Russia and Turkey. This study provides a baseline for future studies on extensive scale on the epidemiology, ecological aspects, distribution pattern, transmission dynamics and population dispersion of L. intestinalis worldwide.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Cambio Climático / Cestodos Límite: Animals Idioma: En Revista: Braz J Biol Asunto de la revista: BIOLOGIA Año: 2022 Tipo del documento: Article País de afiliación: Turquía Pais de publicación: Brasil
Texto completo
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Cambio Climático / Cestodos Límite: Animals Idioma: En Revista: Braz J Biol Asunto de la revista: BIOLOGIA Año: 2022 Tipo del documento: Article País de afiliación: Turquía Pais de publicación: Brasil