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Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Stevens, Eric L; Carleton, Heather A; Beal, Jennifer; Tillman, Glenn E; Lindsey, Rebecca L; Lauer, A C; Pightling, Arthur; Jarvis, Karen G; Ottesen, Andrea; Ramachandran, Padmini; Hintz, Leslie; Katz, Lee S; Folster, Jason P; Whichard, Jean M; Trees, Eija; Timme, Ruth E; McDERMOTT, Patrick; Wolpert, Beverly; Bazaco, Michael; Zhao, Shaohua; Lindley, Sabina; Bruce, Beau B; Griffin, Patricia M; Brown, Eric; Allard, Marc; Tallent, Sandra; Irvin, Kari; Hoffmann, Maria; Wise, Matt; Tauxe, Robert; Gerner-Smidt, Peter; Simmons, Mustafa; Kissler, Bonnie; Defibaugh-Chavez, Stephanie; Klimke, William; Agarwala, Richa; Lindsay, James; Cook, Kimberly; Austerman, Suelee Robbe; Goldman, David; McGARRY, Sherri; Hale, Kis Robertson; Dessai, Uday; Musser, Steven M; Braden, Chris.
Afiliación
  • Stevens EL; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Carleton HA; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Beal J; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Tillman GE; U.S. Department of Agriculture, Food Safety and Inspection Service, Washington, DC 20250.
  • Lindsey RL; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Lauer AC; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Pightling A; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Jarvis KG; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Ottesen A; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Ramachandran P; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Hintz L; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Katz LS; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Folster JP; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Whichard JM; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Trees E; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Timme RE; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • McDERMOTT P; U.S. Food and Drug Administration, Center for Veterinary Medicine, Laurel, Maryland 20708.
  • Wolpert B; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Bazaco M; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Zhao S; U.S. Food and Drug Administration, Center for Veterinary Medicine, Laurel, Maryland 20708.
  • Lindley S; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Bruce BB; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Griffin PM; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Brown E; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Allard M; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Tallent S; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Irvin K; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Hoffmann M; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Wise M; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Tauxe R; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Gerner-Smidt P; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Simmons M; U.S. Department of Agriculture, Food Safety and Inspection Service, Washington, DC 20250.
  • Kissler B; U.S. Department of Agriculture, Food Safety and Inspection Service, Washington, DC 20250.
  • Defibaugh-Chavez S; U.S. Department of Agriculture, Food Safety and Inspection Service, Washington, DC 20250.
  • Klimke W; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894.
  • Agarwala R; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894.
  • Lindsay J; U.S. Department of Agriculture, Agricultural Research Service, Beltsville, Maryland 20705.
  • Cook K; U.S. Department of Agriculture, Agricultural Research Service, Beltsville, Maryland 20705.
  • Austerman SR; U.S. Department of Agriculture, Animal and Plant Health Inspection Service, Ames, Iowa 50010, USA.
  • Goldman D; U.S. Department of Agriculture, Food Safety and Inspection Service, Washington, DC 20250.
  • McGARRY S; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
  • Hale KR; U.S. Department of Agriculture, Food Safety and Inspection Service, Washington, DC 20250.
  • Dessai U; U.S. Department of Agriculture, Food Safety and Inspection Service, Washington, DC 20250.
  • Musser SM; U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland 20740.
  • Braden C; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, Georgia 30329.
J Food Prot ; 85(5): 755-772, 2022 05 01.
Article en En | MEDLINE | ID: mdl-35259246
ABSTRACT: This multiagency report developed by the Interagency Collaboration for Genomics for Food and Feed Safety provides an overview of the use of and transition to whole genome sequencing (WGS) technology for detection and characterization of pathogens transmitted commonly by food and for identification of their sources. We describe foodborne pathogen analysis, investigation, and harmonization efforts among the following federal agencies: National Institutes of Health; Department of Health and Human Services, Centers for Disease Control and Prevention (CDC) and U.S. Food and Drug Administration (FDA); and the U.S. Department of Agriculture, Food Safety and Inspection Service, Agricultural Research Service, and Animal and Plant Health Inspection Service. We describe single nucleotide polymorphism, core-genome, and whole genome multilocus sequence typing data analysis methods as used in the PulseNet (CDC) and GenomeTrakr (FDA) networks, underscoring the complementary nature of the results for linking genetically related foodborne pathogens during outbreak investigations while allowing flexibility to meet the specific needs of Interagency Collaboration partners. We highlight how we apply WGS to pathogen characterization (virulence and antimicrobial resistance profiles) and source attribution efforts and increase transparency by making the sequences and other data publicly available through the National Center for Biotechnology Information. We also highlight the impact of current trends in the use of culture-independent diagnostic tests for human diagnostic testing on analytical approaches related to food safety and what is next for the use of WGS in the area of food safety.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Enfermedades Transmitidas por los Alimentos Límite: Animals País/Región como asunto: America do norte Idioma: En Revista: J Food Prot Año: 2022 Tipo del documento: Article Pais de publicación: Estados Unidos
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Enfermedades Transmitidas por los Alimentos Límite: Animals País/Región como asunto: America do norte Idioma: En Revista: J Food Prot Año: 2022 Tipo del documento: Article Pais de publicación: Estados Unidos