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Chromosome-Level Genome Assembly of the Green Peafowl (Pavo muticus).
Zhang, Xinyuan; Lin, Chuyu; Li, Haimeng; Liu, Sixia; Wang, Qing; Yang, Shangchen; Shi, Minhui; Sahu, Sunil Kumar; Zhu, Yixin; Wang, Jiangang; Huang, Junxuan; Hu, Yiyin; Yu, Jieyao; Zhang, Shaofang; Li, Guanglong; Guan, Wenyuan; Lu, Haorong; Lan, Tianming; Xu, Yanchun.
Afiliación
  • Zhang X; College of Wildlife and Protected Area, Northeast Forestry University, Harbin, China.
  • Lin C; Shenzhen Zhong Nong Jing Yue Biotech Company Limited, Shenzhen, R & D Center, China.
  • Li H; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, China.
  • Liu S; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
  • Wang Q; College of Wildlife and Protected Area, Northeast Forestry University, Harbin, China.
  • Yang S; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, China.
  • Shi M; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
  • Sahu SK; College of Life Sciences, Zhejiang University, Hangzhou, China.
  • Zhu Y; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, China.
  • Wang J; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
  • Huang J; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, China.
  • Hu Y; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, China.
  • Yu J; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
  • Zhang S; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, China.
  • Li G; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, China.
  • Guan W; China National GeneBank, BGI-Shenzhen, Shenzhen, China.
  • Lu H; Guangdong Provincial Key Laboratory of Genome Read and Write, BGI-Shenzhen, Shenzhen, China.
  • Lan T; China National GeneBank, BGI-Shenzhen, Shenzhen, China.
  • Xu Y; Guangdong Provincial Key Laboratory of Genome Read and Write, BGI-Shenzhen, Shenzhen, China.
Genome Biol Evol ; 14(2)2022 02 04.
Article en En | MEDLINE | ID: mdl-35106558
The green peafowl (Pavo muticus) is facing a high risk of extinction due to the long-term and widespread threats of poaching and habitat conversion. Here, we present a high-quality chromosome-level genome assembly of the green peafowl with high contiguity and accuracy assembled by PacBio sequencing, DNBSEQ short-read sequencing, and Hi-C sequencing technologies. The final genome size was estimated to be 1.049 Gb, whereas 1.042 Gb of the genome was assigned to 27 pseudochromosomes. The scaffold N50 length was 75.5 Mb with a complete BUSCO score of 97.6%. We identified W and Z chromosomes and validated them by resequencing 14 additional individuals. Totally, 167.04 Mb repetitive elements were identified in the genome, accounting for 15.92% of the total genome size. We predicted 14,935 protein-coding genes, among which 14,931 genes were functionally annotated. This is the most comprehensive and complete de novo assembly of the Pavo genus, and it will serve as a valuable resource for future green peafowl ecology, evolution, and conservation studies.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Cromosomas / Genoma Tipo de estudio: Prognostic_studies Límite: Humans Idioma: En Revista: Genome Biol Evol Asunto de la revista: BIOLOGIA / BIOLOGIA MOLECULAR Año: 2022 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido
Texto completo
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Cromosomas / Genoma Tipo de estudio: Prognostic_studies Límite: Humans Idioma: En Revista: Genome Biol Evol Asunto de la revista: BIOLOGIA / BIOLOGIA MOLECULAR Año: 2022 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido