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Plant single-cell solutions for energy and the environment.
Cole, Benjamin; Bergmann, Dominique; Blaby-Haas, Crysten E; Blaby, Ian K; Bouchard, Kristofer E; Brady, Siobhan M; Ciobanu, Doina; Coleman-Derr, Devin; Leiboff, Samuel; Mortimer, Jenny C; Nobori, Tatsuya; Rhee, Seung Y; Schmutz, Jeremy; Simmons, Blake A; Singh, Anup K; Sinha, Neelima; Vogel, John P; O'Malley, Ronan C; Visel, Axel; Dickel, Diane E.
Afiliación
  • Cole B; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Bergmann D; Department of Biology, Stanford University and Howard Hughes Medical Institute, Stanford, CA, USA.
  • Blaby-Haas CE; Biology Department, Brookhaven National Laboratory, Upton, NY, USA.
  • Blaby IK; Department of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
  • Bouchard KE; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Brady SM; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Ciobanu D; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Coleman-Derr D; Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Leiboff S; Helen Wills Neuroscience Institute & Redwood Center for Theoretical Neuroscience, University of California, Berkeley, CA, USA.
  • Mortimer JC; Department of Plant Biology, University of California, Davis, CA, USA.
  • Nobori T; Genome Center, University of California, Davis, CA, USA.
  • Rhee SY; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Schmutz J; Plant Gene Expression Center, USDA ARS, Albany, CA, USA.
  • Simmons BA; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
  • Singh AK; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Sinha N; Joint BioEnergy Institute, Emeryville, CA, USA.
  • Vogel JP; School of Agriculture, Food and Wine, Waite Research Institute, Waite Research Precinct, University of Adelaide, Glen Osmond, SA, Australia.
  • O'Malley RC; Plant Biology Laboratory and Howard Hughes Medical Institute, Salk Institute for Biological Studies, La Jolla, CA, USA.
  • Visel A; Carnegie Institution for Science, Department of Plant Biology, Stanford, CA, USA.
  • Dickel DE; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Commun Biol ; 4(1): 962, 2021 08 12.
Article en En | MEDLINE | ID: mdl-34385583
Progress in sequencing, microfluidics, and analysis strategies has revolutionized the granularity at which multicellular organisms can be studied. In particular, single-cell transcriptomics has led to fundamental new insights into animal biology, such as the discovery of new cell types and cell type-specific disease processes. However, the application of single-cell approaches to plants, fungi, algae, or bacteria (environmental organisms) has been far more limited, largely due to the challenges posed by polysaccharide walls surrounding these species' cells. In this perspective, we discuss opportunities afforded by single-cell technologies for energy and environmental science and grand challenges that must be tackled to apply these approaches to plants, fungi and algae. We highlight the need to develop better and more comprehensive single-cell technologies, analysis and visualization tools, and tissue preparation methods. We advocate for the creation of a centralized, open-access database to house plant single-cell data. Finally, we consider how such efforts should balance the need for deep characterization of select model species while still capturing the diversity in the plant kingdom. Investments into the development of methods, their application to relevant species, and the creation of resources to support data dissemination will enable groundbreaking insights to propel energy and environmental science forward.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Plantas / Tecnología / Conservación de los Recursos Energéticos / Bases de Datos como Asunto / Análisis de la Célula Individual / Ciencia Ambiental Idioma: En Revista: Commun Biol Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Reino Unido
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Plantas / Tecnología / Conservación de los Recursos Energéticos / Bases de Datos como Asunto / Análisis de la Célula Individual / Ciencia Ambiental Idioma: En Revista: Commun Biol Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Reino Unido