Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization.

Goren, Emily; Wang, Chong; He, Zhulin; Sheflin, Amy M; Chiniquy, Dawn; Prenni, Jessica E; Tringe, Susannah; Schachtman, Daniel P; Liu, Peng

Goren, Emily; Wang, Chong; He, Zhulin; Sheflin, Amy M; Chiniquy, Dawn; Prenni, Jessica E; Tringe, Susannah; Schachtman, Daniel P; Liu, Peng.

Afiliación

Goren E; Department of Statistics, Iowa State University, 2438 Osborn Dr, Ames, IA, 50011, USA.
Wang C; Department of Statistics, Iowa State University, 2438 Osborn Dr, Ames, IA, 50011, USA.
He Z; Department of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, 2203 Lloyd Veterinary Medical Center, Ames, IA, 50011, USA.
Sheflin AM; Department of Statistics, Iowa State University, 2438 Osborn Dr, Ames, IA, 50011, USA.
Chiniquy D; Department of Horticulture and Landscape Architecture, Colorado State University, 301 University Ave, Fort Collins, CO, 80523, USA.
Prenni JE; Department of Energy, Joint Genome Institute, 2800 Mitchell Dr, Walnut Creek, CA, 94598, USA.
Tringe S; Department of Horticulture and Landscape Architecture, Colorado State University, 301 University Ave, Fort Collins, CO, 80523, USA.
Schachtman DP; Department of Energy, Joint Genome Institute, 2800 Mitchell Dr, Walnut Creek, CA, 94598, USA.
Liu P; Department of Agronomy and Horticulture, University of Nebraska, 1825 N 38th St, Lincoln, NE, 68583, USA.

BMC Bioinformatics ; 22(1): 362, 2021 Jul 06.

Article en En | MEDLINE | ID: mdl-34229628

Asunto(s)

Microbiota; Animales; Factores de Confusión Epidemiológicos; Humanos; Plantas; Estándares de Referencia; Rizosfera

Palabras clave

Causal inference; High-dimensional feature selection; Microbiome analysis; Next-generation sequencing; Standardization

Texto completo

Añadir a Mi BVS

Imprimir

XML

PubMed Links

Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Microbiota Tipo de estudio: Prognostic_studies Límite: Animals / Humans Idioma: En Revista: BMC Bioinformatics Asunto de la revista: INFORMATICA MEDICA Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Reino Unido

Texto completo

Añadir a Mi BVS

Imprimir

XML

PubMed Links

Buscar en Google