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Recommendations for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples.
Kubik, Slawomir; Marques, Ana Claudia; Xing, Xiaobin; Silvery, Janine; Bertelli, Claire; De Maio, Flavio; Pournaras, Spyros; Burr, Tom; Duffourd, Yannis; Siemens, Helena; Alloui, Chakib; Song, Lin; Wenger, Yvan; Saitta, Alexandra; Macheret, Morgane; Smith, Ewan W; Menu, Philippe; Brayer, Marion; Steinmetz, Lars M; Si-Mohammed, Ali; Chuisseu, Josiane; Stevens, Richard; Constantoulakis, Pantelis; Sali, Michela; Greub, Gilbert; Tiemann, Carsten; Pelechano, Vicent; Willig, Adrian; Xu, Zhenyu.
Afiliación
  • Kubik S; SOPHiA GENETICS, Chemin des Mines 9, CH-1202 Geneva, Switzerland.
  • Marques AC; SOPHiA GENETICS, Rue Du Centre 172, CH-1025 Saint Sulpice, Switzerland.
  • Xing X; SOPHiA GENETICS, Rue Du Centre 172, CH-1025 Saint Sulpice, Switzerland.
  • Silvery J; LABCON-OWL Analytik, Forschung und Consulting GmbH, Siemensstraße 40, 32105 Bad Salzuflen, Germany.
  • Bertelli C; Genomics and Metagenomics Laboratory, Institute of Microbiology, Lausanne University Hospital and University of Lausanne, Bugnon 48, 1011 Lausanne, Switzerland.
  • De Maio F; Fondazione Policlinico Universitario A. Gemelli IRCCS, Università Cattolica Del Sacro Cuore, L.go Agostino Gemelli 8, 00168 Roma, Italy.
  • Pournaras S; Laboratory of Clinical Microbiology, Attikon University Hospital Medical School, National and Kapodistrian University of Athens, Athens, Rimini 1, Chaidari 124 62, Greece.
  • Burr T; Source BioScience, Units 24/25, William James House, Cowley Road, Cambridge, CB4 0WU, United Kingdom.
  • Duffourd Y; Equipe GAD - Inserm U1231, CHU François Mitterrand, 21000 Dijon, France.
  • Siemens H; LABCON-OWL Analytik, Forschung und Consulting GmbH, Siemensstraße 40, 32105 Bad Salzuflen, Germany.
  • Alloui C; Laboratoire de Virologie, CHU Avicenne, AP-HP, 93000 Bobigny, France.
  • Song L; SOPHiA GENETICS, Rue Du Centre 172, CH-1025 Saint Sulpice, Switzerland.
  • Wenger Y; SOPHiA GENETICS, Chemin des Mines 9, CH-1202 Geneva, Switzerland.
  • Saitta A; SOPHiA GENETICS, Chemin des Mines 9, CH-1202 Geneva, Switzerland.
  • Macheret M; SOPHiA GENETICS, Chemin des Mines 9, CH-1202 Geneva, Switzerland.
  • Smith EW; SOPHiA GENETICS, Chemin des Mines 9, CH-1202 Geneva, Switzerland.
  • Menu P; SOPHiA GENETICS, Rue Du Centre 172, CH-1025 Saint Sulpice, Switzerland.
  • Brayer M; SOPHiA GENETICS, Rue Du Centre 172, CH-1025 Saint Sulpice, Switzerland.
  • Steinmetz LM; Stanford Genome Technology Center, Stanford University, Palo Alto, CA, USA.
  • Si-Mohammed A; Laboratoire de Virologie, CHU François Mitterrand, 2, Rue Angélique Ducoudray, 2100 Dijon, France.
  • Chuisseu J; Source BioScience, Units 24/25, William James House, Cowley Road, Cambridge, CB4 0WU, United Kingdom.
  • Stevens R; Source BioScience, Units 24/25, William James House, Cowley Road, Cambridge, CB4 0WU, United Kingdom.
  • Constantoulakis P; BioAnalytica Genotypos SA, 3-5 Ilision Str, 115 28 Athens, Greece.
  • Sali M; Dipartimento di Scienze Biotecnologiche di Base, Cliniche Intensivologiche e Perioperatorie - Sezione di Microbiologia, Università Cattolica Del Sacro Cuore, Rome, Italy.
  • Greub G; Genomics and Metagenomics Laboratory, Institute of Microbiology, Lausanne University Hospital and University of Lausanne, Bugnon 48, 1011 Lausanne, Switzerland.
  • Tiemann C; LABCON-OWL Analytik, Forschung und Consulting GmbH, Siemensstraße 40, 32105 Bad Salzuflen, Germany.
  • Pelechano V; SciLifeLab, Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, 17165 Solna, Sweden.
  • Willig A; SOPHiA GENETICS, Chemin des Mines 9, CH-1202 Geneva, Switzerland.
  • Xu Z; SOPHiA GENETICS, Rue Du Centre 172, CH-1025 Saint Sulpice, Switzerland. Electronic address: zxu@sophiagenetics.com.
Clin Microbiol Infect ; 27(7): 1036.e1-1036.e8, 2021 Jul.
Article en En | MEDLINE | ID: mdl-33813118
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Secuenciación de Nucleótidos de Alto Rendimiento / Técnicas de Genotipaje / Secuenciación Completa del Genoma / SARS-CoV-2 / COVID-19 Tipo de estudio: Diagnostic_studies / Guideline / Prognostic_studies Límite: Humans Idioma: En Revista: Clin Microbiol Infect Asunto de la revista: DOENCAS TRANSMISSIVEIS / MICROBIOLOGIA Año: 2021 Tipo del documento: Article País de afiliación: Suiza Pais de publicación: Reino Unido
Texto completo
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PubMed Links
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Secuenciación de Nucleótidos de Alto Rendimiento / Técnicas de Genotipaje / Secuenciación Completa del Genoma / SARS-CoV-2 / COVID-19 Tipo de estudio: Diagnostic_studies / Guideline / Prognostic_studies Límite: Humans Idioma: En Revista: Clin Microbiol Infect Asunto de la revista: DOENCAS TRANSMISSIVEIS / MICROBIOLOGIA Año: 2021 Tipo del documento: Article País de afiliación: Suiza Pais de publicación: Reino Unido