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Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir.
Fellows Yates, James A; Andrades Valtueña, Aida; Vågene, Åshild J; Cribdon, Becky; Velsko, Irina M; Borry, Maxime; Bravo-Lopez, Miriam J; Fernandez-Guerra, Antonio; Green, Eleanor J; Ramachandran, Shreya L; Heintzman, Peter D; Spyrou, Maria A; Hübner, Alexander; Gancz, Abigail S; Hider, Jessica; Allshouse, Aurora F; Zaro, Valentina; Warinner, Christina.
Afiliación
  • Fellows Yates JA; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, 07745, Jena, Germany. fellows@shh.mpg.de.
  • Andrades Valtueña A; Institut für Vor- und Frühgeschichtliche Archäologie und Provinzialrömische Archäologie, Ludwig-Maximilians-Universität München, München, 80539, Germany. fellows@shh.mpg.de.
  • Vågene ÅJ; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, 07745, Jena, Germany.
  • Cribdon B; Section for Evolutionary Genomics, GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1350, Denmark.
  • Velsko IM; School of Life Sciences, University of Warwick, Coventry, CV4 7AL, United Kingdom.
  • Borry M; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, 07745, Jena, Germany.
  • Bravo-Lopez MJ; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, 07745, Jena, Germany.
  • Fernandez-Guerra A; International Laboratory for Human Genome Research, National Autonomous University of Mexico, Queretaro, 76230, Mexico.
  • Green EJ; Section for GeoGenetics, GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1350, Denmark.
  • Ramachandran SL; Microbial Genomics and Bioinformatics Research Group, Max Planck Institute for Marine Microbiology, Bremen, 28359, Germany.
  • Heintzman PD; BioArCh, Department of Archaeology, University of York, York, YO10 5DD, United Kingdom.
  • Spyrou MA; Department of Earth Sciences, Natural History Museum, London, SW7 5BD, United Kingdom.
  • Hübner A; Human Genetics, University of Chicago, Chicago, IL, 60637, USA.
  • Gancz AS; The Arctic University Museum of Norway, UiT The Arctic University of Norway, Tromsø, 9037, Norway.
  • Hider J; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, 07745, Jena, Germany.
  • Allshouse AF; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, 07745, Jena, Germany.
  • Zaro V; Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, 04103, Germany.
  • Warinner C; Department of Anthropology, Pennsylvania State University, Pennsylvania, PA, 16802, USA.
Sci Data ; 8(1): 31, 2021 01 26.
Article en En | MEDLINE | ID: mdl-33500403
Ancient DNA and RNA are valuable data sources for a wide range of disciplines. Within the field of ancient metagenomics, the number of published genetic datasets has risen dramatically in recent years, and tracking this data for reuse is particularly important for large-scale ecological and evolutionary studies of individual taxa and communities of both microbes and eukaryotes. AncientMetagenomeDir (archived at https://doi.org/10.5281/zenodo.3980833 ) is a collection of annotated metagenomic sample lists derived from published studies that provide basic, standardised metadata and accession numbers to allow rapid data retrieval from online repositories. These tables are community-curated and span multiple sub-disciplines to ensure adequate breadth and consensus in metadata definitions, as well as longevity of the database. Internal guidelines and automated checks facilitate compatibility with established sequence-read archives and term-ontologies, and ensure consistency and interoperability for future meta-analyses. This collection will also assist in standardising metadata reporting for future ancient metagenomic studies.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Bases de Datos Genéticas / Metagenoma / Metagenómica Límite: Humans Idioma: En Revista: Sci Data Año: 2021 Tipo del documento: Article País de afiliación: Alemania Pais de publicación: Reino Unido
Texto completo
Añadir a Mi BVS
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XML
PubMed Links
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Bases de Datos Genéticas / Metagenoma / Metagenómica Límite: Humans Idioma: En Revista: Sci Data Año: 2021 Tipo del documento: Article País de afiliación: Alemania Pais de publicación: Reino Unido