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Assessment of holographic microscopy for quantifying marine particle size and concentration.
Walcutt, Noah L; Knörlein, Benjamin; Cetinic, Ivona; Ljubesic, Zrinka; Bosak, Suncica; Sgouros, Tom; Montalbano, Amanda L; Neeley, Aimee; Menden-Deuer, Susanne; Omand, Melissa M.
Afiliación
  • Walcutt NL; University of Rhode Island, Graduate School of Oceanography Narragansett Rhode Island USA.
  • Knörlein B; Brown University, Center for Computation and Visualization Providence Rhode Island USA.
  • Cetinic I; NASA Goddard Space Flight Center Ocean Ecology Laboratory Greenbelt Maryland USA.
  • Ljubesic Z; GESTAR/Universities Space Research Association Columbia Maryland USA.
  • Bosak S; Faculty of Science, Department of Biology University of Zagreb Zagreb Croatia.
  • Sgouros T; Faculty of Science, Department of Biology University of Zagreb Zagreb Croatia.
  • Montalbano AL; Department of Computer Science Brown University Providence Rhode Island USA.
  • Neeley A; University of Rhode Island, Graduate School of Oceanography Narragansett Rhode Island USA.
  • Menden-Deuer S; NASA Goddard Space Flight Center Ocean Ecology Laboratory Greenbelt Maryland USA.
  • Omand MM; University of Rhode Island, Graduate School of Oceanography Narragansett Rhode Island USA.
Limnol Oceanogr Methods ; 18(9): 516-530, 2020 Sep.
Article en En | MEDLINE | ID: mdl-33041697
Holographic microscopy has emerged as a tool for in situ imaging of microscopic organisms and other particles in the marine environment: appealing because of the relatively larger sampling volume and simpler optical configuration compared to other imaging systems. However, its quantitative capabilities have so far remained uncertain, in part because hologram reconstruction and image recognition have required manual operation. Here, we assess the quantitative skill of our automated hologram processing pipeline (CCV Pipeline), to evaluate the size and concentration measurements of environmental and cultured assemblages of marine plankton particles, and microspheres. Over 1 million particles, ranging from 10 to 200 µm in equivalent spherical diameter, imaged by the 4-Deep HoloSea digital inline holographic microscope (DIHM) are analyzed. These measurements were collected in parallel with a FlowCam (FC), Imaging FlowCytobot (IFCB), and manual microscope identification. Once corrections for particle location and nonuniform illumination were developed and applied, the DIHM showed an underestimate in ESD of about 3% to 10%, but successfully reproduced the size spectral slope from environmental samples, and the size distribution of cultures (Dunaliella tertiolecta, Heterosigma akashiwo, and Prorocentrum micans) and microspheres. DIHM concentrations (order 1 to 1000 particles ml-1) showed a linear agreement (r 2 = 0.73) with the other instruments, but individual comparisons at times had large uncertainty. Overall, we found the DIHM and the CCV Pipeline required extensive manual correction, but once corrected, provided concentration and size estimates comparable to the other imaging systems assessed in this study. Holographic cameras are mechanically simple, autonomous, can operate at very high pressures, and provide a larger sampling volume than comparable lens-based tools. Thus, we anticipate that these characterization efforts will be rewarded with novel discovery in new oceanic environments.

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Limnol Oceanogr Methods Año: 2020 Tipo del documento: Article Pais de publicación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Limnol Oceanogr Methods Año: 2020 Tipo del documento: Article Pais de publicación: Estados Unidos