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An intraresidue H-bonding motif in selenocysteine and cysteine, revealed by gas phase laser spectroscopy and quantum chemistry calculations.
Goldsztejn, Gildas; Mundlapati, Venkateswara Rao; Donon, Jérémy; Tardivel, Benjamin; Gloaguen, Eric; Brenner, Valérie; Mons, Michel.
Afiliación
  • Goldsztejn G; Laboratoire Interactions Dynamiques et Lasers (LIDYL), Université Paris-Saclay, Paris, France. michel.mons@cea.fr.
  • Mundlapati VR; Laboratoire Interactions Dynamiques et Lasers (LIDYL), Université Paris-Saclay, Paris, France. michel.mons@cea.fr.
  • Donon J; Laboratoire Interactions Dynamiques et Lasers (LIDYL), Université Paris-Saclay, Paris, France. michel.mons@cea.fr.
  • Tardivel B; Laboratoire Interactions Dynamiques et Lasers (LIDYL), Université Paris-Saclay, Paris, France. michel.mons@cea.fr.
  • Gloaguen E; Laboratoire Interactions Dynamiques et Lasers (LIDYL), Université Paris-Saclay, Paris, France. michel.mons@cea.fr.
  • Brenner V; Laboratoire Interactions Dynamiques et Lasers (LIDYL), Université Paris-Saclay, Paris, France. michel.mons@cea.fr.
  • Mons M; Laboratoire Interactions Dynamiques et Lasers (LIDYL), Université Paris-Saclay, Paris, France. michel.mons@cea.fr.
Phys Chem Chem Phys ; 22(36): 20409-20420, 2020 Sep 23.
Article en En | MEDLINE | ID: mdl-32914809
Models of protein chains containing a seleno-cysteine (Sec) residue have been investigated by gas phase laser spectroscopy in order to document the effect of the H-bonding properties of the SeH group in the folding of the Sec side chain, by comparison with recent data on Ser- and Cys-containing sequences. Experimental data, complemented by quantum chemistry calculations and natural bonding orbital (NBO) analyses, are interpreted in terms of the formation of a so-called 5γ intra-residue motif, which bridges the acceptor chalcogen atom of the side chain to the NH bond of the same residue. This local structure, in which the O/S/Se atom is close to the plane of the N-terminal side amide, is constrained by local backbone-side chain hyperconjugation effects involving the S and Se atoms. Theoretical investigations of the Cys/Sec side chain show that (i) this 5γ motif is an intrinsic feature of these residues, (ii) the corresponding H-bond is strongly non-linear and intrinsically weak, (iii) but enhanced by γ- and ß-turn secondary structures, which promote a more favorable 5γ H-bonding approach and distance. The resulting H-bonds are slightly stronger in selenocysteine than in cysteine, but nearly inexistent in serine, whose side chain in contrast behaves as a H-bonding donor. The modest spectral shifts of the Cys/Sec NH stretches measured experimentally reflect the moderate strength of the 5γ H-bonding, in agreement with the correlation obtained with a NBO-based H-bond strength indicator. The evolution along the Ser, Cys and Sec series emphasizes the compromise between the several factors that control the H-bonding in a hyperconjugation-constrained geometry, among them the chalcogen van der Waals and covalent radii. It also illustrates the 5γ H-bond enhancements with the Sec and Cys residues favoured by the constraints imposed by the γ- and ß-turn structures of the peptide chain.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Selenocisteína / Cisteína / Dipéptidos Tipo de estudio: Prognostic_studies Idioma: En Revista: Phys Chem Chem Phys Asunto de la revista: BIOFISICA / QUIMICA Año: 2020 Tipo del documento: Article País de afiliación: Francia Pais de publicación: Reino Unido

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Selenocisteína / Cisteína / Dipéptidos Tipo de estudio: Prognostic_studies Idioma: En Revista: Phys Chem Chem Phys Asunto de la revista: BIOFISICA / QUIMICA Año: 2020 Tipo del documento: Article País de afiliación: Francia Pais de publicación: Reino Unido