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The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization.
Du, Kang; Stöck, Matthias; Kneitz, Susanne; Klopp, Christophe; Woltering, Joost M; Adolfi, Mateus Contar; Feron, Romain; Prokopov, Dmitry; Makunin, Alexey; Kichigin, Ilya; Schmidt, Cornelia; Fischer, Petra; Kuhl, Heiner; Wuertz, Sven; Gessner, Jörn; Kloas, Werner; Cabau, Cédric; Iampietro, Carole; Parrinello, Hugues; Tomlinson, Chad; Journot, Laurent; Postlethwait, John H; Braasch, Ingo; Trifonov, Vladimir; Warren, Wesley C; Meyer, Axel; Guiguen, Yann; Schartl, Manfred.
Afiliación
  • Du K; Physiological Chemistry, Biocenter, University of Wuerzburg, Wuerzburg, Germany.
  • Stöck M; Developmental Biochemistry, Biocenter, University of Wuerzburg, Wuerzburg, Germany.
  • Kneitz S; Leibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Berlin, Germany. matthias.stoeck@igb-berlin.de.
  • Klopp C; Physiological Chemistry, Biocenter, University of Wuerzburg, Wuerzburg, Germany.
  • Woltering JM; Plate-forme Bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France.
  • Adolfi MC; SIGENAE, GenPhySE, Université de Toulouse, INRA, ENVT, Castanet-Tolosan, France.
  • Feron R; Lehrstuhl für Zoologie und Evolutionsbiologie, Department of Biology, University of Konstanz, Konstanz, Germany.
  • Prokopov D; Physiological Chemistry, Biocenter, University of Wuerzburg, Wuerzburg, Germany.
  • Makunin A; Department of Ecology and Evolution, University of Lausanne, and Swiss Institute of Bioinformatics, Lausanne, Switzerland.
  • Kichigin I; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, Novosibirsk State University, Novosibirsk, Russia.
  • Schmidt C; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, Novosibirsk State University, Novosibirsk, Russia.
  • Fischer P; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, Novosibirsk State University, Novosibirsk, Russia.
  • Kuhl H; Physiological Chemistry, Biocenter, University of Wuerzburg, Wuerzburg, Germany.
  • Wuertz S; Physiological Chemistry, Biocenter, University of Wuerzburg, Wuerzburg, Germany.
  • Gessner J; Leibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Berlin, Germany.
  • Kloas W; Leibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Berlin, Germany.
  • Cabau C; Leibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Berlin, Germany.
  • Iampietro C; Leibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Berlin, Germany.
  • Parrinello H; Plate-forme Bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France.
  • Tomlinson C; SIGENAE, GenPhySE, Université de Toulouse, INRA, ENVT, Castanet-Tolosan, France.
  • Journot L; INRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
  • Postlethwait JH; Montpellier GenomiX (MGX), c/o Institut de Génomique Fonctionnelle, Montpellier, France.
  • Braasch I; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
  • Trifonov V; Montpellier GenomiX (MGX), c/o Institut de Génomique Fonctionnelle, Montpellier, France.
  • Warren WC; Institute of Neuroscience, University of Oregon, Eugene, OR, USA.
  • Meyer A; Department of Integrative Biology, Michigan State University, East Lansing, MI, USA.
  • Guiguen Y; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, Novosibirsk State University, Novosibirsk, Russia.
  • Schartl M; Bond Life Sciences Center, University of Missouri, Columbia, MO, USA.
Nat Ecol Evol ; 4(6): 841-852, 2020 06.
Article en En | MEDLINE | ID: mdl-32231327
Sturgeons seem to be frozen in time. The archaic characteristics of this ancient fish lineage place it in a key phylogenetic position at the base of the ~30,000 modern teleost fish species. Moreover, sturgeons are notoriously polyploid, providing unique opportunities to investigate the evolution of polyploid genomes. We assembled a high-quality chromosome-level reference genome for the sterlet, Acipenser ruthenus. Our analysis revealed a very low protein evolution rate that is at least as slow as in other deep branches of the vertebrate tree, such as that of the coelacanth. We uncovered a whole-genome duplication that occurred in the Jurassic, early in the evolution of the entire sturgeon lineage. Following this polyploidization, the rediploidization of the genome included the loss of whole chromosomes in a segmental deduplication process. While known adaptive processes helped conserve a high degree of structural and functional tetraploidy over more than 180 million years, the reduction of redundancy of the polyploid genome seems to have been remarkably random.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma / Peces Límite: Animals Idioma: En Revista: Nat Ecol Evol Año: 2020 Tipo del documento: Article País de afiliación: Alemania Pais de publicación: Reino Unido
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma / Peces Límite: Animals Idioma: En Revista: Nat Ecol Evol Año: 2020 Tipo del documento: Article País de afiliación: Alemania Pais de publicación: Reino Unido