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Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons.
Wang, Baozhan; Qin, Wei; Ren, Yi; Zhou, Xue; Jung, Man-Young; Han, Ping; Eloe-Fadrosh, Emiley A; Li, Meng; Zheng, Yue; Lu, Lu; Yan, Xin; Ji, Junbin; Liu, Yang; Liu, Linmeng; Heiner, Cheryl; Hall, Richard; Martens-Habbena, Willm; Herbold, Craig W; Rhee, Sung-Keun; Bartlett, Douglas H; Huang, Li; Ingalls, Anitra E; Wagner, Michael; Stahl, David A; Jia, Zhongjun.
Afiliación
  • Wang B; State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
  • Qin W; Centre for Microbiology and Environmental Systems Science, Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria.
  • Ren Y; School of Oceanography, University of Washington, Seattle, WA, USA.
  • Zhou X; Shanghai Majorbio Bio-pharm Biotechnology Co., Ltd, Shanghai, China.
  • Jung MY; State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
  • Han P; Centre for Microbiology and Environmental Systems Science, Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria.
  • Eloe-Fadrosh EA; Centre for Microbiology and Environmental Systems Science, Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria.
  • Li M; Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA.
  • Zheng Y; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
  • Lu L; Institute for Advanced Study, Shenzhen University, Shenzhen, China.
  • Yan X; CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China.
  • Ji J; State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
  • Liu Y; College of Life Sciences, Nanjing Agricultural University, Nanjing, China.
  • Liu L; College of Life Sciences, Nanjing Agricultural University, Nanjing, China.
  • Heiner C; Institute for Advanced Study, Shenzhen University, Shenzhen, China.
  • Hall R; Shanghai Majorbio Bio-pharm Biotechnology Co., Ltd, Shanghai, China.
  • Martens-Habbena W; Pacific Biosciences, Menlo Park, CA, USA.
  • Herbold CW; Pacific Biosciences, Menlo Park, CA, USA.
  • Rhee SK; Department of Microbiology and Cell Science & Fort Lauderdale Research and Education Center, University of Florida, Gainesville, FL, USA.
  • Bartlett DH; Centre for Microbiology and Environmental Systems Science, Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria.
  • Huang L; Department of Microbiology, Chungbuk National University, Cheongju, South Korea.
  • Ingalls AE; Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA.
  • Wagner M; State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.
  • Stahl DA; School of Oceanography, University of Washington, Seattle, WA, USA.
  • Jia Z; Centre for Microbiology and Environmental Systems Science, Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria.
ISME J ; 13(12): 3067-3079, 2019 12.
Article en En | MEDLINE | ID: mdl-31462715
Thaumarchaeota are responsible for a significant fraction of ammonia oxidation in the oceans and in soils that range from alkaline to acidic. However, the adaptive mechanisms underpinning their habitat expansion remain poorly understood. Here we show that expansion into acidic soils and the high pressures of the hadopelagic zone of the oceans is tightly linked to the acquisition of a variant of the energy-yielding ATPases via horizontal transfer. Whereas the ATPase genealogy of neutrophilic Thaumarchaeota is congruent with their organismal genealogy inferred from concatenated conserved proteins, a common clade of V-type ATPases unites phylogenetically distinct clades of acidophilic/acid-tolerant and piezophilic/piezotolerant species. A presumptive function of pumping cytoplasmic protons at low pH is consistent with the experimentally observed increased expression of the V-ATPase in an acid-tolerant thaumarchaeote at low pH. Consistently, heterologous expression of the thaumarchaeotal V-ATPase significantly increased the growth rate of E. coli at low pH. Its adaptive significance to growth in ocean trenches may relate to pressure-related changes in membrane structure in which this complex molecular machine must function. Together, our findings reveal that the habitat expansion of Thaumarchaeota is tightly correlated with extensive horizontal transfer of atp operons.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Operón / Archaea / Adenosina Trifosfatasas / Proteínas Arqueales / Transferencia de Gen Horizontal Idioma: En Revista: ISME J Asunto de la revista: MICROBIOLOGIA / SAUDE AMBIENTAL Año: 2019 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido
Texto completo
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Operón / Archaea / Adenosina Trifosfatasas / Proteínas Arqueales / Transferencia de Gen Horizontal Idioma: En Revista: ISME J Asunto de la revista: MICROBIOLOGIA / SAUDE AMBIENTAL Año: 2019 Tipo del documento: Article País de afiliación: China Pais de publicación: Reino Unido